PTBP2 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000011727 T41638_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.712
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.712
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000010528 RRM 48 104
ENSSTOP00000010528 RRM 170 225
ENSSTOP00000010528 RRM 332 398
ENSSTOP00000010528 RRM 449 513

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.910
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.902
PTBP2 Homo sapiens ENSG00000117569 I 0.902
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.902
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.902
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.902
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.902
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.902
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.902
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.902
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.902
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.902
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.902
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.902
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.902
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.898
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.898
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.898
LOC100057336 Equus caballus ENSECAG00000015783 I 0.895
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.895
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.895
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.883
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.879
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.879
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.837
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.775
PTBP2 Danio rerio ENSDARG00000015901 I 0.765
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.753
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.741
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.738
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.735
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.728
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.712
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.712
PTBP1 Homo sapiens ENSG00000011304 D 0.712
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.708
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.708
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.708
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.704
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.704
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.704
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.704
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.700