LOC100057336 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000015783 T36642_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.795
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.795
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.795
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000013599 RRM 30 86
ENSECAP00000013599 RRM 152 218
ENSECAP00000013599 RRM 309 375
ENSECAP00000013599 RRM 426 490

Links

Other RRM family RBPs
Other Equus caballus RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.996
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.996
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.996
PTBP2 Homo sapiens ENSG00000117569 I 0.996
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.992
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.992
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.992
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.992
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.992
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.992
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.992
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.992
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.992
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.992
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.992
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.992
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.988
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.984
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.984
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.977
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.977
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.973
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.907
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.895
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.872
PTBP2 Danio rerio ENSDARG00000015901 I 0.857
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.841
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.838
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.827
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.826
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.819
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.795
PTBP1 Homo sapiens ENSG00000011304 D 0.795
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.795
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.791
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.787
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.787
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.787
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.787
Ptbp2 Dipodomys ordii ENSDORG00000011260 N 0.786
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.783
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.783
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.779
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.779
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.775
AAH45068 Xenopus laevis AAH45068 I 0.772
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.767
PTBP1 Equus caballus ENSECAG00000018845 I 0.767
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.767
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.767
AAF00041 Xenopus laevis AAF00041 I 0.761
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.761
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.748
ptbp1a Danio rerio ENSDARG00000019362 I 0.741
ROD1 Equus caballus ENSECAG00000021243 I 0.740
ROD1 Sus scrofa ENSSSCG00000005466 I 0.740
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.736
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.734
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.734
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.730
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.730
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.730
Rod1 Mus musculus ENSMUSG00000028382 I 0.730
ROD1 Homo sapiens ENSG00000119314 I 0.730
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.730
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.730
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.730
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.730
ROD1 Danio rerio ENSDARG00000043757 I 0.729
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.726
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.726
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.725
ptbp1b Danio rerio ENSDARG00000031907 I 0.725
ROD1 Bos taurus ENSBTAG00000016750 I 0.725
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.722
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.721
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.721
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.718
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.714
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.710
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.705
AAH97557 Xenopus laevis AAH97557 I 0.703