CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ptbp1
(
Xenopus tropicalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSXETG00000021661
T42938_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.840
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.840
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.840
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000004741
RRM
64
104
IHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKGKNQVCMKV
ENSXETP00000004741
RRM
189
255
IIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVSAQHAKLSLDGQNIYNACCT
ENSXETP00000004741
RRM
294
346
QTIAAFGVYGDVHRVKILFNKKENALVQMADGNQAQLAMSHLNGQRLHGKPLR
ENSXETP00000004741
RRM
397
462
LHLSNIPPSVSEEDLKMLFSNNGYTVKGFKFFQKDRKMALIQMGSVEEAIESLIELHNHDMGENHH
ENSXETP00000046826
RRM
64
104
IHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKGKNQVCMKV
ENSXETP00000046826
RRM
189
255
IIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVSAQHAKLSLDGQNIYNACCT
ENSXETP00000046826
RRM
362
428
LLVSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKENALVQMADGNQAQLAMSHLNGQRLHGKPLR
ENSXETP00000046826
RRM
479
544
LHLSNIPPSVSEEDLKMLFSNNGYTVKGFKFFQKDRKMALIQMGSVEEAIESLIELHNHDMGENHH
ENSXETP00000046827
RRM
64
105
IHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKGKNQVCMKVY
ENSXETP00000046827
RRM
189
255
IIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVSAQHAKLSLDGQNIYNACCT
ENSXETP00000046827
RRM
362
428
LLVSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKENALVQMADGNQAQLAMSHLNGQRLHGKPLR
ENSXETP00000046827
RRM
479
544
LHLSNIPPSVSEEDLKMLFSNNGYTVKGFKFFQKDRKMALIQMGSVEEAIESLIELHNHDMGENHH
Links
Other
RRM
family RBPs
Other
Xenopus tropicalis
RBPs
83 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH45068
Xenopus laevis
AAH45068
I
0.911
AAF00041
Xenopus laevis
AAF00041
I
0.899
AAH97557
Xenopus laevis
AAH97557
I
0.893
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.885
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.871
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.871
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.856
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.856
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.844
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.844
PTBP1
Homo sapiens
ENSG00000011304
D
0.840
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.840
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.840
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.840
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.837
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.833
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.833
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.829
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.825
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.817
PTBP1
Equus caballus
ENSECAG00000018845
I
0.813
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.791
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.790
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.788
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.787
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.778
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.777
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.776
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.774
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.774
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.770
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.764
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.758
ROD1
Equus caballus
ENSECAG00000021243
I
0.758
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.755
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.751
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.751
Rod1
Mus musculus
ENSMUSG00000028382
I
0.751
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.751
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.747
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.747
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.747
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.747
ROD1
Homo sapiens
ENSG00000119314
I
0.747
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.747
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.747
ROD1
Bos taurus
ENSBTAG00000016750
I
0.746
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.743
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.743
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.739
ROD1
Danio rerio
ENSDARG00000043757
I
0.735
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.735
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.733
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.725
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.721
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.721
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.721
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.717
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.717
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.717
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.717
PTBP2
Homo sapiens
ENSG00000117569
I
0.717
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.717
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.717
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.717
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.717
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.717
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.717
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.717
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.717
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.717
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.717
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.717
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.714
ROD1
Takifugu rubripes
ENSTRUG00000007042
I
0.712
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.709
ROD1
Tetraodon nigroviridis
ENSTNIG00000002790
I
0.708
PTBP2
Oryzias latipes
ENSORLG00000013557
I
0.707
PTBP2
Gasterosteus aculeatus
ENSGACG00000014892
I
0.707
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.705
PTBP2
Danio rerio
ENSDARG00000015901
I
0.704
PTBP2
Dasypus novemcinctus
ENSDNOG00000017687
N
0.704