PTBP2 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000014892 T37523_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.754
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.754
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000019660 RRM 62 117
ENSGACP00000019660 RRM 182 248
ENSGACP00000019660 RRM 356 423
ENSGACP00000019660 RRM 474 539

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.969
PTBP2 Danio rerio ENSDARG00000015901 I 0.884
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.872
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.843
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.834
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.834
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.830
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.830
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.830
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.830
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.830
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.830
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.830
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.830
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.830
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.830
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.830
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.830
PTBP2 Homo sapiens ENSG00000117569 I 0.830
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.830
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.828
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.826
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.826
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.826
LOC100057336 Equus caballus ENSECAG00000015783 I 0.826
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.826
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.826
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.815
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.757
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.754
PTBP1 Homo sapiens ENSG00000011304 D 0.754
AAF00041 Xenopus laevis AAF00041 I 0.754
AAH45068 Xenopus laevis AAH45068 I 0.754
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.754
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.753
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.753
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.750
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.750
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.746
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.746
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.746
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.746
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.742
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.742
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.741
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.738
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.738
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.738
PTBP1 Equus caballus ENSECAG00000018845 I 0.731
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.731
ptbp1a Danio rerio ENSDARG00000019362 I 0.716
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.713
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.708
ptbp1b Danio rerio ENSDARG00000031907 I 0.708
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.707
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.707
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.705
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.700
AAH97557 Xenopus laevis AAH97557 I 0.700
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.700