PTBP2 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000015901 T36080_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.770
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.770
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.770
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000036256 RRM 56 110
ENSDARP00000036256 RRM 177 243
ENSDARP00000036256 RRM 347 413
ENSDARP00000036256 RRM 464 530

Links

Other RRM family RBPs
Other Danio rerio RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.895
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.884
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.884
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.857
PTBP2 Homo sapiens ENSG00000117569 I 0.857
LOC100057336 Equus caballus ENSECAG00000015783 I 0.857
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.857
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.857
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.857
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.854
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.854
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.854
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.854
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.854
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.854
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.854
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.854
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.854
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.854
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.854
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.854
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.854
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.854
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.854
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.853
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.850
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.846
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.840
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.781
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.770
PTBP1 Homo sapiens ENSG00000011304 D 0.770
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.770
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.766
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.765
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.765
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.765
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.762
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.762
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.762
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.759
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.759
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.755
AAH45068 Xenopus laevis AAH45068 I 0.751
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.751
AAF00041 Xenopus laevis AAF00041 I 0.751
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.751
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.747
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.747
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.747
PTBP1 Equus caballus ENSECAG00000018845 I 0.743
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.735
ptbp1a Danio rerio ENSDARG00000019362 I 0.733
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.724
ptbp1b Danio rerio ENSDARG00000031907 I 0.716
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.713
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.706
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.704
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.704
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.704