Rbm47 (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000010144 T36496_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.812
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.782
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000009536 RRM 77 146
ENSDORP00000009536 RRM 183 223
ENSDORP00000009536 RRM 251 315

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM47 Sorex araneus ENSSARG00000001735 I 0.851
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.847
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.847
RBM47 Procavia capensis ENSPCAG00000011879 I 0.842
RBM47 Sus scrofa ENSSSCG00000008796 I 0.842
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.842
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.842
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.842
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.842
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.842
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.842
RBM47 Homo sapiens ENSG00000163694 I 0.842
RBM47 Echinops telfairi ENSETEG00000009194 I 0.842
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.842
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.842
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.837
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.837
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.837
RBM47 Felis catus ENSFCAG00000012399 I 0.837
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.837
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.837
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.832
Rbm47 Mus musculus ENSMUSG00000070780 I 0.832
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.828
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.827
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.822
LOC100063743 Equus caballus ENSECAG00000004400 I 0.817
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.812
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.812
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.812
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.797
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.782
RBM47 Spermophilus tridecemlineatus ENSSTOG00000004727 I 0.776
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.767
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.767
RBM47 Danio rerio ENSDARG00000061985 I 0.762
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.762
RBM47 Oryzias latipes ENSORLG00000005847 I 0.762
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.744
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.738