CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF3
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000001042
T37383_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000001355
RRM
11
76
VYVGNLGNNGNKTELERSFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVR
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
63 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SRSF3
Oryzias latipes
ENSORLG00000000292
I
0.985
SRSF3
Vicugna pacos
ENSVPAG00000005481
I
0.970
srsf3
Xenopus tropicalis
ENSXETG00000001701
I
0.970
SRSF3
Homo sapiens
ENSG00000112081
I
0.970
SRSF3
Felis catus
ENSFCAG00000001084
I
0.970
srsf3a
Danio rerio
ENSDARG00000025397
I
0.970
SRSF3
Tupaia belangeri
ENSTBEG00000012272
I
0.970
SFRS3
Taeniopygia guttata
ENSTGUG00000000928
I
0.970
SRSF3
Tetraodon nigroviridis
ENSTNIG00000014643
N
0.970
Ame_R002060
Ailuropoda melanoleuca
Ame_R002060
I
0.970
SRSF3
Echinops telfairi
ENSETEG00000010117
I
0.970
Q9XSU6_CANFA
Canis familiaris
ENSCAFG00000001414
I
0.970
LOC100408013
Callithrix jacchus
ENSCJAG00000016062
I
0.970
SRSF3
Cavia porcellus
ENSCPOG00000003722
I
0.970
SFRS3_BOVIN
Bos taurus
ENSBTAG00000040006
I
0.970
SRSF3
Anolis carolinensis
ENSACAG00000016637
I
0.970
LOC100053336
Equus caballus
ENSECAG00000018741
I
0.970
ENSDORG00000012283
Dipodomys ordii
ENSDORG00000012283
I
0.970
srsf3b
Danio rerio
ENSDARG00000059360
I
0.970
SRSF3
Spermophilus tridecemlineatus
ENSSTOG00000014280
I
0.970
SRSF3
Tursiops truncatus
ENSTTRG00000013447
I
0.970
SRSF3
Microcebus murinus
ENSMICG00000004674
I
0.970
SRSF3
Macaca mulatta
ENSMMUG00000014306
I
0.970
SRSF3
Monodelphis domestica
ENSMODG00000013539
I
0.970
SRSF3
Meleagris gallopavo
ENSMGAG00000002503
I
0.970
ENSLAFG00000018193
Loxodonta africana
ENSLAFG00000018193
I
0.970
SFRS3
Gallus gallus
ENSGALG00000000533
I
0.970
SRSF3
Gorilla gorilla
ENSGGOG00000017186
I
0.970
SRSF3
Oryctolagus cuniculus
ENSOCUG00000006684
I
0.970
Srsf3
Mus musculus
ENSMUSG00000071172
I
0.970
SRSF3
Ochotona princeps
ENSOPRG00000006006
I
0.970
XR_022443.1
Pan troglodytes
ENSPTRG00000018106
I
0.970
SRSF3
Pteropus vampyrus
ENSPVAG00000014621
I
0.970
ENSPPYG00000016548
Pongo pygmaeus
ENSPPYG00000016548
I
0.970
Sfrs3
Rattus norvegicus
ENSRNOG00000000520
I
0.970
SRSF3
Tetraodon nigroviridis
ENSTNIG00000001003
I
0.955
AAH46661
Xenopus laevis
AAH46661
I
0.955
Gm12355
Mus musculus
ENSMUSG00000078134
I
0.955
SRSF3
Sus scrofa
ENSSSCG00000001564
I
0.955
SRSF3
Oryzias latipes
ENSORLG00000020054
I
0.939
SRSF3
Gasterosteus aculeatus
ENSGACG00000001473
N
0.909
ENSLAFG00000026731
Loxodonta africana
ENSLAFG00000026731
N
0.909
SRSF3
Myotis lucifugus
ENSMLUG00000010671
N
0.833
SRSF3
Choloepus hoffmanni
ENSCHOG00000002515
N
0.833
SRSF3
Erinaceus europaeus
ENSEEUG00000001119
N
0.833
SRSF3
Otolemur garnettii
ENSOGAG00000000502
N
0.833
estExt_fgenesh1_pm.C_10147
Daphnia pulex
estExt_fgenesh1_pm.C_10147
I
0.788
ENSCING00000011663
Ciona intestinalis
ENSCING00000011663
I
0.788
ENSCSAVG00000002676
Ciona savignyi
ENSCSAVG00000002676
I
0.788
PHUM565080
Pediculus humanus
PHUM565080
I
0.773
amel4_ncbi_hmm63829
Apis mellifera
amel4_ncbi_hmm63829
I
0.758
amel4_ncbi_hmm65494
Apis mellifera
amel4_ncbi_hmm65494
I
0.758
gw.267.29.1
Branchiostoma floridae
gw.267.29.1
N
0.742
GM13734
Drosophila sechellia
FBgn0168665
N
0.742
nasonia_NCBI_hmm78264
Nasonia vitripennis
nasonia_NCBI_hmm78264
I
0.742
PHUM357390
Pediculus humanus
PHUM357390
I
0.727
PASA_GEN_2500115
Daphnia pulex
PASA_GEN_2500115
I
0.727
AAEL001356
Aedes aegypti
AAEL001356
I
0.727
nasonia_NCBI_hmm124154
Nasonia vitripennis
nasonia_NCBI_hmm124154
I
0.727
AGAP007325
Anopheles gambiae
AGAP007325
I
0.727
e_gw1.25.110.1
Daphnia pulex
e_gw1.25.110.1
N
0.712
CpipJ_CPIJ003074
Culex pipiens
CpipJ_CPIJ003074
I
0.712
CPIJ003074
Culex quinquefasciatus
CPIJ003074
I
0.712