CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R001126
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R001126
T55487_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R001126
RRM
2
33
PAGYCFVEFADLATAEKCLHKINGKPLPGATP
Ame_R001126
RRM
56
127
LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALSECQGAVGLGSKPVR
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TRNAU1AP
Echinops telfairi
ENSETEG00000012594
N
0.990
TRNAU1AP
Spermophilus tridecemlineatus
ENSSTOG00000000079
N
0.981
TRNAU1AP
Vicugna pacos
ENSVPAG00000006778
N
0.972
TRNAU1AP
Dasypus novemcinctus
ENSDNOG00000010065
N
0.972
Trnau1ap
Dipodomys ordii
ENSDORG00000006349
N
0.963
TRNAU1AP
Tupaia belangeri
ENSTBEG00000008049
N
0.942
TRNAU1AP
Otolemur garnettii
ENSOGAG00000002274
N
0.758
TRNAU1AP
Microcebus murinus
ENSMICG00000008386
N
0.746
TRNAU1AP
Taeniopygia guttata
ENSTGUG00000000735
N
0.739
TRNAU1AP
Sorex araneus
ENSSARG00000007536
N
0.739
TRNAU1AP
Pteropus vampyrus
ENSPVAG00000017214
N
0.720
TRNAU1AP
Tursiops truncatus
ENSTTRG00000001854
N
0.720
TRNAU1AP
Loxodonta africana
ENSLAFG00000007628
N
0.720
TRNAU1AP
Cavia porcellus
ENSCPOG00000001925
N
0.720
LOC100399818
Callithrix jacchus
ENSCJAG00000009717
N
0.720
TRNAU1AP
Canis familiaris
ENSCAFG00000011735
N
0.720
LOC100070713
Equus caballus
ENSECAG00000012980
N
0.720
TRNAU1AP
Homo sapiens
ENSG00000180098
N
0.720
TRNAU1AP
Gorilla gorilla
ENSGGOG00000003511
N
0.720
TRNAU1AP
Tarsius syrichta
ENSTSYG00000003506
N
0.713
TSAP1_BOVIN
Bos taurus
ENSBTAG00000010393
N
0.713
TRNAU1AP
Myotis lucifugus
ENSMLUG00000012586
N
0.713
TRNAU1AP
Felis catus
ENSFCAG00000013401
N
0.713
TRNAU1AP
Meleagris gallopavo
ENSMGAG00000002105
N
0.712
TRSPAP1
Gallus gallus
ENSGALG00000001310
N
0.706
TRNAU1AP
Macropus eugenii
ENSMEUG00000006117
N
0.705
ENSOCUG00000002353
Oryctolagus cuniculus
ENSOCUG00000002353
N
0.701