CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000013564
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000013564
T40541_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000015166
RRM
27
74
KMSTLTDCVVMRDPQKRSRGFFVTYSCVEEVDAAMCARPHKVDGRVVQ
ENSPPYP00000015166
RRM
95
162
IFVGGIKEDTEYNLRDYFEKYGKIETIEVMEDRQSGKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPA3
Canis familiaris
ENSCAFG00000015889
I
0.765
ENSPPYG00000001326
Pongo pygmaeus
ENSPPYG00000001326
I
0.759
HNRNPA3
Callithrix jacchus
ENSCJAG00000032542
N
0.739
ENSRNOG00000043173
Rattus norvegicus
ENSRNOG00000043173
I
0.721
ENSRNOG00000033211
Rattus norvegicus
ENSRNOG00000033211
I
0.707
HNRNPA3
Monodelphis domestica
ENSMODG00000019803
I
0.705
ENSCAFG00000023240
Canis familiaris
ENSCAFG00000023240
I
0.703
D3ZB90_RAT
Rattus norvegicus
ENSRNOG00000038392
N
0.702