ENSPPYG00000001326 (Pongo pygmaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPPYG00000001326 T40434_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.807
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.807
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.807
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.786
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000001542 RRM 16 84
ENSPPYP00000001542 RRM 106 172

Links

Other RRM family RBPs
Other Pongo pygmaeus RBPs

115 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.839
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.821
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.818
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.817
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.816
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.810
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.807
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.807
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.807
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.804
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.801
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.800
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.799
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.797
LOC100066794 Equus caballus ENSECAG00000023237 I 0.797
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.797
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.796
LOC781499 Bos taurus ENSBTAG00000021580 I 0.792
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.792
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.792
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.792
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.792
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.792
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.792
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.792
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.792
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.792
HNRNPA3 Homo sapiens ENSG00000170144 I 0.792
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.792
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.792
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.792
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.792
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.792
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.792
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.792
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.791
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.791
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.791
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.791
Gm8991 Mus musculus ENSMUSG00000059179 I 0.791
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.785
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.780
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.777
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.777
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.772
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.770
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.764
ENSPPYG00000013564 Pongo pygmaeus ENSPPYG00000013564 N 0.759
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.758
P51968 Xenopus laevis P51968 I 0.757
AAA49949 Xenopus laevis AAA49949 I 0.757
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.755
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.750
P51992 Xenopus laevis P51992 I 0.747
AAA49950 Xenopus laevis AAA49950 I 0.747
AAI69881 Xenopus laevis AAI69881 I 0.747
CBU92451 Xenopus laevis CBU92451 I 0.747
CBF67578 Xenopus laevis CBF67578 I 0.747
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.743
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.743
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.741
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.740
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.739
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.738
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.735
HNRNPA3 Tupaia belangeri ENSTBEG00000017108 N 0.734
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.733
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.730
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.728
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.728
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.725
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.723
ENSCJAG00000013441 Callithrix jacchus ENSCJAG00000013441 N 0.719
D3ZHS1_RAT Rattus norvegicus ENSRNOG00000017364 N 0.716
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.716
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.716
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.716
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.716
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.716
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.710
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.709
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.709
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.709
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.709
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.709
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.709
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.709
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.709
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.709
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.709
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.709
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.709
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.709
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.709
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.709
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.709
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.709
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.709
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.709
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.709
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.709
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.709
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.709
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.709
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.709
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.709
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.709
HNRNPA1 Homo sapiens ENSG00000135486 D 0.709
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.709
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.709
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.708
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.703
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.703
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.701