ENSCAFG00000023240 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000023240 T35209_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.762
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.762
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.762
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000019874 RRM 45 114
ENSCAFP00000019874 RRM 136 195

Links

Other RRM family RBPs
Other Canis familiaris RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.839
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.784
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.779
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.779
Gm8991 Mus musculus ENSMUSG00000059179 I 0.776
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.773
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.770
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.769
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.769
LOC100066794 Equus caballus ENSECAG00000023237 I 0.769
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.768
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.764
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.764
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.764
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.764
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.764
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.764
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.764
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.764
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.764
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.764
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.764
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.764
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.764
HNRNPA3 Homo sapiens ENSG00000170144 I 0.764
LOC781499 Bos taurus ENSBTAG00000021580 I 0.764
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.764
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.764
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.764
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.762
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.762
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.762
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.762
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.762
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.761
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.759
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.757
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.757
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.757
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.755
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.755
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.748
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.743
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.741
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.740
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.736
P51968 Xenopus laevis P51968 I 0.735
AAA49949 Xenopus laevis AAA49949 I 0.735
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.732
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.730
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.730
ENSCJAG00000013441 Callithrix jacchus ENSCJAG00000013441 N 0.726
CBU92451 Xenopus laevis CBU92451 I 0.725
P51992 Xenopus laevis P51992 I 0.725
AAI69881 Xenopus laevis AAI69881 I 0.725
AAA49950 Xenopus laevis AAA49950 I 0.725
CBF67578 Xenopus laevis CBF67578 I 0.725
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.721
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.714
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.712
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.711
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.711
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.709
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.707
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.705
HNRNPA3 Tupaia belangeri ENSTBEG00000017108 N 0.705
ENSPPYG00000013564 Pongo pygmaeus ENSPPYG00000013564 N 0.703
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.702
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.701
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.701
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.701
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.701