CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH1
(
Pteropus vampyrus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPVAG00000007670
T40900_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.724
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000007243
RRM
13
35
VKVRGLPWSCSADEVQRFFSXXX
ENSPVAP00000007243
RRM
113
182
VRVKGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSPVAP00000007243
RRM
291
358
VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE
Links
Other
RRM
family RBPs
Other
Pteropus vampyrus
RBPs
50 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
0.743
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
0.743
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.743
HNRNPH1
Homo sapiens
ENSG00000169045
I
0.743
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
0.743
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
0.743
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
0.743
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
0.743
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
0.743
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.743
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
0.743
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
0.743
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
0.743
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
0.743
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
0.743
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
0.743
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.738
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.733
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.733
HNRNPH2
Pteropus vampyrus
ENSPVAG00000001571
I
0.724
HNRNPH2
Gorilla gorilla
ENSGGOG00000008096
I
0.724
ENSOCUG00000010629
Oryctolagus cuniculus
ENSOCUG00000010629
I
0.724
HNRNPH2
Pan troglodytes
ENSPTRG00000022107
I
0.724
HNRNPH2
Ochotona princeps
ENSOPRG00000007985
I
0.724
ENSOCUG00000006387
Oryctolagus cuniculus
ENSOCUG00000006387
I
0.724
HNRNPH2
Macaca mulatta
ENSMMUG00000019580
I
0.724
ENSPPYG00000020553
Pongo pygmaeus
ENSPPYG00000020553
I
0.724
LOC100057665
Equus caballus
ENSECAG00000023575
I
0.724
HNRH2_BOVIN
Bos taurus
ENSBTAG00000007499
I
0.724
HNRNPH2
Canis familiaris
ENSCAFG00000017693
I
0.724
HNRNPH2
Tarsius syrichta
ENSTSYG00000007811
I
0.724
HNRNPH2
Homo sapiens
ENSG00000126945
D
0.724
HNRNPH2
Tursiops truncatus
ENSTTRG00000012786
I
0.724
HNRNPH2
Callithrix jacchus
ENSCJAG00000004908
I
0.724
HNRNPH2
Cavia porcellus
ENSCPOG00000012405
I
0.724
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.724
Ame_R018226
Ailuropoda melanoleuca
Ame_R018226
I
0.724
HNRNPH2
Echinops telfairi
ENSETEG00000008416
I
0.724
HNRNPH2
Sorex araneus
ENSSARG00000014182
I
0.724
Hnrnph2
Rattus norvegicus
ENSRNOG00000011661
I
0.719
Hnrnph2
Mus musculus
ENSMUSG00000045427
I
0.719
hnrnph1l
Danio rerio
ENSDARG00000005551
I
0.719
ENSACAG00000016323
Anolis carolinensis
ENSACAG00000016323
I
0.714
HNRNPH2
Procavia capensis
ENSPCAG00000003333
I
0.714
AAI10708
Xenopus laevis
AAI10708
I
0.710
AAH77770
Xenopus laevis
AAH77770
I
0.710
hnrnph2
Xenopus tropicalis
ENSXETG00000018321
I
0.710
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.705
HNRNPH1
Takifugu rubripes
ENSTRUG00000001031
I
0.705
AAH70969
Xenopus laevis
AAH70969
I
0.705