ENSRNOG00000017651 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000017651 T41119_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.771
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.771
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.771
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000008039 RRM 16 83
ENSRNOP00000008039 RRM 104 167

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.740
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.740
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.740
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.740
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.740
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.740
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.740
HNRNPA1 Homo sapiens ENSG00000135486 D 0.740
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.740
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.740
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.740
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.740
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.740
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.740
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.740
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.740
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.740
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.740
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.740
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.740
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.740
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.740
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.740
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.740
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.740
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.740
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.740
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.739
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.733
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.733
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.733
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.733
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.733
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.733
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.733
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.733
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.733
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.733
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.733
ENSRNOG00000029434 Rattus norvegicus ENSRNOG00000029434 I 0.728
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.726
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.726
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.726
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.726
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.726
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.726
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.719
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.719
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.719
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.719
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.719
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.719
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.719
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.719
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.719
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.719
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.717
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.716
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.712
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.712
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.712
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.712
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.712
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.712
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.712
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.710
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.710
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.709
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.705
LOC785445 Bos taurus ENSBTAG00000025621 I 0.705
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.705
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.705
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.704
LOC100054206 Equus caballus ENSECAG00000006699 I 0.703
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.703
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.703
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.701
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.701
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.701
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.700