D4ABW2_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000032168 T41215_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.819
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.819
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.819
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.799
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000052438 RRM 16 87
ENSRNOP00000052438 RRM 108 174

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

169 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.795
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.795
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.795
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.795
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.795
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.795
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.795
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.795
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.795
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.795
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.795
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.795
HNRNPA1 Homo sapiens ENSG00000135486 D 0.795
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.795
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.795
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.795
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.795
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.795
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.795
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.795
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.795
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.795
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.795
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.795
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.795
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.795
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.795
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.795
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.795
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.788
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.788
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.788
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.788
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.788
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.788
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.788
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.788
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.788
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.781
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.781
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.781
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.781
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.781
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.781
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.781
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.781
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.781
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.781
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.774
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.774
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.774
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.774
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.774
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.774
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.769
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.768
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.767
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.767
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.767
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.767
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.767
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.766
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.766
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.766
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.764
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.762
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.761
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.760
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.760
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.760
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.760
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.760
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.760
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.759
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.755
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.754
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.753
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.753
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.753
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.753
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.753
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.753
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.752
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.752
LOC100054206 Equus caballus ENSECAG00000006699 I 0.752
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.752
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.752
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.750
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.747
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.747
LOC785445 Bos taurus ENSBTAG00000025621 I 0.747
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.747
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.746
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.746
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.745
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.745
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.743
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.741
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.740
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.740
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.740
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.739
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.738
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.738
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.738
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.736
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.736
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.735
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.733
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.733
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.733
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.733
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.733
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.733
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.733
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.732
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.731
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.731
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.729
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.729
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.729
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.726
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.726
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.726
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.726
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.726
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.726
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.725
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.724
AAH45260 Xenopus laevis AAH45260 I 0.719
CBU92546 Xenopus laevis CBU92546 I 0.719
CBF67672 Xenopus laevis CBF67672 I 0.719
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.719
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.719
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.719
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.719
AAH72090 Xenopus laevis AAH72090 I 0.719
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.719
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.719
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.719
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.718
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.718
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.718
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.718
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.718
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.715
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.712
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.712
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.712
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.712
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.711
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.710
D3ZQR9_RAT Rattus norvegicus ENSRNOG00000027605 I 0.709
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.706
CBF67555 Xenopus laevis CBF67555 I 0.705
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.705
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.705
AAA49742 Xenopus laevis AAA49742 I 0.705
CBU92428 Xenopus laevis CBU92428 I 0.705
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.705
P17130 Xenopus laevis P17130 I 0.705
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.705
AAA49741 Xenopus laevis AAA49741 I 0.705
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.704
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.704
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.704
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.703
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.701
ENSRNOG00000017651 Rattus norvegicus ENSRNOG00000017651 I 0.701