ENSCJAG00000007634 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000007634 T35539_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.799
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.799
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.799
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.785
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000014150 RRM 16 85
ENSCJAP00000014150 RRM 106 173

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

169 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.781
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.775
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.774
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.774
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.774
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.774
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.774
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.774
HNRNPA1 Homo sapiens ENSG00000135486 D 0.774
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.774
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.774
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.774
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.774
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.774
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.774
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.774
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.774
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.774
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.774
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.774
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.774
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.774
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.774
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.774
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.774
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.774
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.774
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.774
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.774
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.774
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.768
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.767
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.767
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.767
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.767
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.767
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.767
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.767
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.767
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.767
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.767
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.767
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.766
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.766
LOC100054206 Equus caballus ENSECAG00000006699 I 0.766
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.760
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.760
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.760
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.760
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.760
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.760
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.760
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.760
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.757
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.755
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.754
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.754
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.754
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.753
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.753
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.753
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.753
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.753
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.753
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.753
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.747
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.747
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.747
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.747
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.747
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.747
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.747
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.747
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.746
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.745
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.745
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.745
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.745
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.740
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.740
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.740
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.740
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.740
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.740
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.740
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.740
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.740
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.739
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.739
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.739
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.738
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.738
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.738
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.738
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.738
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.738
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.736
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.736
LOC785445 Bos taurus ENSBTAG00000025621 I 0.733
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.733
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.733
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.733
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.733
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.733
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.733
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.733
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.733
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.733
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.732
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.731
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.731
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.731
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.729
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.729
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.729
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.726
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.726
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.726
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.726
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.726
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.726
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.726
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.725
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.725
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.725
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.724
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.724
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.724
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.724
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.724
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.720
AAH45260 Xenopus laevis AAH45260 I 0.719
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.719
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.719
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.719
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.719
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.719
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.718
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.718
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.717
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.717
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.717
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.715
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.712
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.712
CBF67672 Xenopus laevis CBF67672 I 0.712
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.712
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.712
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.712
CBU92546 Xenopus laevis CBU92546 I 0.712
AAH72090 Xenopus laevis AAH72090 I 0.712
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.711
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.711
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.711
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.711
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.710
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.709
ENSRNOG00000017651 Rattus norvegicus ENSRNOG00000017651 I 0.709
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.707
CBF67555 Xenopus laevis CBF67555 I 0.705
CBU92428 Xenopus laevis CBU92428 I 0.705
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.705
AAA49741 Xenopus laevis AAA49741 I 0.705
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.705
P17130 Xenopus laevis P17130 I 0.705
AAA49742 Xenopus laevis AAA49742 I 0.705
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.705
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.705
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.703