CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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D3ZPK9_RAT
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000023341
T41159_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000034453
RRM
178
225
VFVGNLPVTCNKKKLKSFFKEYGQVESTRFHSVMPAEGTLSKKLAAIK
ENSRNOP00000034453
RRM
222
265
AAIKRKFPPDQKSINAYVVFKEESAAAKALSRNGAQTAEGFRIV
ENSRNOP00000034453
RRM
279
347
VFVGNLPYKVEESALEEHLDCGSIVAVRTVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLR
ENSRNOP00000062315
RRM
181
228
VFVGNLPVTCNKKKLKSFFKEYGQVESTRFHSVMPAEGTLSKKLAAIK
ENSRNOP00000062315
RRM
225
268
AAIKRKFPPDQKSINAYVVFKEESAAAKALSRNGAQTAEGFRIV
ENSRNOP00000062315
RRM
282
350
VFVGNLPYKVEESALEEHLDCGSIVAVRTVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLR
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Rbm34
Mus musculus
ENSMUSG00000033931
N
0.839
Rbm34
Rattus norvegicus
ENSRNOG00000020004
N
0.839
RBM34
Sus scrofa
ENSSSCG00000010157
N
0.804
Ame_R015227
Ailuropoda melanoleuca
Ame_R015227
N
0.798
RBM34
Felis catus
ENSFCAG00000001852
N
0.798
Rbm34
Dipodomys ordii
ENSDORG00000006420
N
0.781
RBM34
Pteropus vampyrus
ENSPVAG00000015158
N
0.776
RBM34
Myotis lucifugus
ENSMLUG00000016224
N
0.774
RBM34
Pan troglodytes
ENSPTRG00000032432
N
0.774
RBM34
Loxodonta africana
ENSLAFG00000014289
N
0.774
RBM34
Homo sapiens
ENSG00000188739
N
0.774
LOC100146167
Equus caballus
ENSECAG00000013333
N
0.774
RBM34
Gorilla gorilla
ENSGGOG00000007924
N
0.774
RBM34
Cavia porcellus
ENSCPOG00000015213
N
0.768
A8NJ74_BOVIN
Bos taurus
ENSBTAG00000000221
N
0.765
ARID4B
Macaca mulatta
ENSMMUG00000007141
N
0.762
A6MKB3_CALJA
Callithrix jacchus
ENSCJAG00000018125
N
0.756
RBM34
Oryctolagus cuniculus
ENSOCUG00000009173
N
0.746
RBM34
Ornithorhynchus anatinus
ENSOANG00000001206
N
0.714