CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A8NJ74_BOVIN
(
Bos taurus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSBTAG00000000221
T34756_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000000269
RRM
190
237
VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIK
ENSBTAP00000000269
RRM
229
277
LSKKLAAIKRKIHPDQKNINAYVVFKDESAATKALERNGAQFAEGFRVR
ENSBTAP00000000269
RRM
292
361
VFVGNLPYKVEESAVEKHFLACGNVVAVRIVRDQVTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLR
ENSBTAP00000052119
RRM
187
234
VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIK
ENSBTAP00000052119
RRM
226
263
LSKKLAAIKRKIHPDQKNINAYVVFKDESAATKAGKKW
Links
Other
RRM
family RBPs
Other
Bos taurus
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM34
Sus scrofa
ENSSSCG00000010157
N
0.946
RBM34
Loxodonta africana
ENSLAFG00000014289
N
0.928
Ame_R015227
Ailuropoda melanoleuca
Ame_R015227
N
0.928
RBM34
Felis catus
ENSFCAG00000001852
N
0.922
ARID4B
Macaca mulatta
ENSMMUG00000007141
N
0.910
A6MKB3_CALJA
Callithrix jacchus
ENSCJAG00000018125
N
0.904
RBM34
Oryctolagus cuniculus
ENSOCUG00000009173
N
0.898
RBM34
Pan troglodytes
ENSPTRG00000032432
N
0.898
RBM34
Pteropus vampyrus
ENSPVAG00000015158
N
0.898
Rbm34
Dipodomys ordii
ENSDORG00000006420
N
0.892
RBM34
Homo sapiens
ENSG00000188739
N
0.892
LOC100146167
Equus caballus
ENSECAG00000013333
N
0.892
RBM34
Gorilla gorilla
ENSGGOG00000007924
N
0.880
RBM34
Myotis lucifugus
ENSMLUG00000016224
N
0.880
RBM34
Cavia porcellus
ENSCPOG00000015213
N
0.868
Rbm34
Mus musculus
ENSMUSG00000033931
N
0.868
Rbm34
Rattus norvegicus
ENSRNOG00000020004
N
0.856
RBM34
Tursiops truncatus
ENSTTRG00000002216
N
0.802
RBM34
Ornithorhynchus anatinus
ENSOANG00000001206
N
0.802
RBM34
Monodelphis domestica
ENSMODG00000008436
N
0.781
D3ZPK9_RAT
Rattus norvegicus
ENSRNOG00000023341
N
0.765
RBM34
Anolis carolinensis
ENSACAG00000001253
N
0.707