CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM34
(
Pteropus vampyrus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPVAG00000015158
T40965_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000014285
RRM
186
233
VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSVIPAEGTLSKKLAAIK
ENSPVAP00000014285
RRM
225
273
LSKKLAAIKRKIHPDQKNINAYVVFKDENSAARALSRNGAQIADGFRIR
ENSPVAP00000014285
RRM
288
357
VFVGNLPYKAEEPAVEEHFLDCGSVVAVRIVRDPRTGVGRGFGFVLFENTDAVHLALKLNNSELMGRKLR
ENSPVAP00000016958
RRM
181
228
VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSVIPAEGTLSKKLAAIK
ENSPVAP00000016958
RRM
220
268
LSKKLAAIKRKIHPDQKNINAYVVFKDENSAARALSRNGAQIADGFRIR
ENSPVAP00000016958
RRM
283
352
VFVGNLPYKAEEPAVEEHFLDCGSVVAVRIVRDPRTGVGRGFGFVLFENTDAVHLALKLNNSELMGRKLR
Links
Other
RRM
family RBPs
Other
Pteropus vampyrus
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM34
Sus scrofa
ENSSSCG00000010157
N
0.928
Ame_R015227
Ailuropoda melanoleuca
Ame_R015227
N
0.910
Rbm34
Dipodomys ordii
ENSDORG00000006420
N
0.898
RBM34
Loxodonta africana
ENSLAFG00000014289
N
0.898
A8NJ74_BOVIN
Bos taurus
ENSBTAG00000000221
N
0.898
RBM34
Felis catus
ENSFCAG00000001852
N
0.892
ARID4B
Macaca mulatta
ENSMMUG00000007141
N
0.880
Rbm34
Mus musculus
ENSMUSG00000033931
N
0.880
RBM34
Pan troglodytes
ENSPTRG00000032432
N
0.880
RBM34
Homo sapiens
ENSG00000188739
N
0.874
LOC100146167
Equus caballus
ENSECAG00000013333
N
0.874
A6MKB3_CALJA
Callithrix jacchus
ENSCJAG00000018125
N
0.874
Rbm34
Rattus norvegicus
ENSRNOG00000020004
N
0.868
RBM34
Myotis lucifugus
ENSMLUG00000016224
N
0.868
RBM34
Oryctolagus cuniculus
ENSOCUG00000009173
N
0.868
RBM34
Gorilla gorilla
ENSGGOG00000007924
N
0.868
RBM34
Cavia porcellus
ENSCPOG00000015213
N
0.856
RBM34
Ornithorhynchus anatinus
ENSOANG00000001206
N
0.826
D3ZPK9_RAT
Rattus norvegicus
ENSRNOG00000023341
N
0.776
RBM34
Monodelphis domestica
ENSMODG00000008436
N
0.757
RBM34
Tursiops truncatus
ENSTTRG00000002216
N
0.749