CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A6MKB3_CALJA
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000018125
T35655_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000012078
RRM
187
234
VFVGNLPVTCDKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIK
ENSCJAP00000012078
RRM
228
274
KKLAAIKRKIHPDQKNINAYVVFKDGSAATQALKRNGAQIADGFRIR
ENSCJAP00000012078
RRM
289
358
VFVGNLPYKVEESAVEKHFLDCGSIMAVRIVRDQVTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLR
ENSCJAP00000033501
RRM
187
223
VFVGNLPVTCDKKKLKSFFKEYGQIESVRFRSLVCFI
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARID4B
Macaca mulatta
ENSMMUG00000007141
N
0.970
RBM34
Pan troglodytes
ENSPTRG00000032432
N
0.970
RBM34
Homo sapiens
ENSG00000188739
N
0.964
RBM34
Gorilla gorilla
ENSGGOG00000007924
N
0.952
Ame_R015227
Ailuropoda melanoleuca
Ame_R015227
N
0.939
RBM34
Loxodonta africana
ENSLAFG00000014289
N
0.939
RBM34
Sus scrofa
ENSSSCG00000010157
N
0.933
RBM34
Oryctolagus cuniculus
ENSOCUG00000009173
N
0.916
RBM34
Felis catus
ENSFCAG00000001852
N
0.909
A8NJ74_BOVIN
Bos taurus
ENSBTAG00000000221
N
0.904
LOC100146167
Equus caballus
ENSECAG00000013333
N
0.903
RBM34
Cavia porcellus
ENSCPOG00000015213
N
0.891
Rbm34
Dipodomys ordii
ENSDORG00000006420
N
0.886
RBM34
Pteropus vampyrus
ENSPVAG00000015158
N
0.874
RBM34
Myotis lucifugus
ENSMLUG00000016224
N
0.867
Rbm34
Mus musculus
ENSMUSG00000033931
N
0.861
Rbm34
Rattus norvegicus
ENSRNOG00000020004
N
0.848
RBM34
Ornithorhynchus anatinus
ENSOANG00000001206
N
0.812
RBM34
Tursiops truncatus
ENSTTRG00000002216
N
0.782
RBM34
Monodelphis domestica
ENSMODG00000008436
N
0.769
D3ZPK9_RAT
Rattus norvegicus
ENSRNOG00000023341
N
0.756
RBM34
Anolis carolinensis
ENSACAG00000001253
N
0.709