msi (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0011666 T43009_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
msi
M095_0.6		 Drosophila melanogaster AGUAGKD RNAcompete
Ray et al.(2013)
RNCMPT00099 		(Direct)
msi
M096_0.6		 Drosophila melanogaster AGUAGGD RNAcompete
Ray et al.(2013)
RNCMPT00100 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M095_0.6 RRM 16 85
M095_0.6 RRM 104 173
M096_0.6 RRM 51 120
M096_0.6 RRM 139 208

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0084255 RRM 205 274
FBpp0084255 RRM 293 362
FBpp0084256 RRM 177 246
FBpp0084256 RRM 265 334
FBpp0293748 RRM 205 274
FBpp0293748 RRM 293 362
FBpp0293749 RRM 176 245
FBpp0293749 RRM 264 333

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GG11413 Drosophila erecta FBgn0103713 I 1.000
GM10251 Drosophila sechellia FBgn0165202 I 1.000
GE23609 Drosophila yakuba FBgn0240782 I 1.000
GF17697 Drosophila ananassae FBgn0094715 I 0.993
GA27393-RA Drosophila pseudoobscura FBgn0248760 I 0.986
GH18982 Drosophila grimshawi FBgn0126449 I 0.986
GK12850 Drosophila willistoni FBgn0214859 I 0.979
GI22407 Drosophila mojavensis FBgn0145135 I 0.971
AGAP001993 Anopheles gambiae AGAP001993 I 0.943
nasonia_NCBI_hmm958624 Nasonia vitripennis nasonia_NCBI_hmm958624 I 0.921
CPIJ006948 Culex quinquefasciatus CPIJ006948 I 0.921
CpipJ_CPIJ006948 Culex pipiens CpipJ_CPIJ006948 I 0.921
AAEL006057 Aedes aegypti AAEL006057 I 0.914
DGIL_AUG5s2560g3t3 Acyrtosiphon pisum DGIL_AUG5s2560g3t3 I 0.837
PHUM361200 Pediculus humanus PHUM361200 I 0.837
amel4_ncbi_hmm946 Apis mellifera amel4_ncbi_hmm946 I 0.836
e_gw1.7.478.1 Daphnia pulex e_gw1.7.478.1 I 0.780
msi Drosophila simulans FBgn0025033 I 0.716