CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GF17697
(
Drosophila ananassae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0094715
T43259_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
msi
M096_0.6
Drosophila melanogaster
AGUAGGD
RNAcompete
Ray et al.(2013)
RNCMPT00100
0.993
msi
M095_0.6
Drosophila melanogaster
AGUAGKD
RNAcompete
Ray et al.(2013)
RNCMPT00099
0.993
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0120889
RRM
207
276
LFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVQKVLKVPIHTLDGKKID
FBpp0120889
RRM
295
364
IFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVE
Links
Other
RRM
family RBPs
Other
Drosophila ananassae
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
msi
Drosophila melanogaster
FBgn0011666
D
0.993
GM10251
Drosophila sechellia
FBgn0165202
I
0.993
GG11413
Drosophila erecta
FBgn0103713
I
0.993
GE23609
Drosophila yakuba
FBgn0240782
I
0.993
GH18982
Drosophila grimshawi
FBgn0126449
I
0.986
GA27393-RA
Drosophila pseudoobscura
FBgn0248760
I
0.979
GK12850
Drosophila willistoni
FBgn0214859
I
0.979
GI22407
Drosophila mojavensis
FBgn0145135
I
0.971
AGAP001993
Anopheles gambiae
AGAP001993
I
0.943
nasonia_NCBI_hmm958624
Nasonia vitripennis
nasonia_NCBI_hmm958624
I
0.921
CPIJ006948
Culex quinquefasciatus
CPIJ006948
I
0.921
CpipJ_CPIJ006948
Culex pipiens
CpipJ_CPIJ006948
I
0.921
AAEL006057
Aedes aegypti
AAEL006057
I
0.914
amel4_ncbi_hmm946
Apis mellifera
amel4_ncbi_hmm946
I
0.836
PHUM361200
Pediculus humanus
PHUM361200
I
0.830
DGIL_AUG5s2560g3t3
Acyrtosiphon pisum
DGIL_AUG5s2560g3t3
I
0.830
e_gw1.7.478.1
Daphnia pulex
e_gw1.7.478.1
I
0.780
msi
Drosophila simulans
FBgn0025033
I
0.709