GA27393-RA (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0248760 T44411_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
msi
M096_0.6 		Drosophila melanogaster AGUAGGD RNAcompete
Ray et al.(2013)
RNCMPT00100 		0.986
msi
M095_0.6 		Drosophila melanogaster AGUAGKD RNAcompete
Ray et al.(2013)
RNCMPT00099 		0.986
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0284404 RRM 212 281
FBpp0284404 RRM 300 369

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
msi Drosophila melanogaster FBgn0011666 D 0.986
GG11413 Drosophila erecta FBgn0103713 I 0.986
GM10251 Drosophila sechellia FBgn0165202 I 0.986
GE23609 Drosophila yakuba FBgn0240782 I 0.986
GF17697 Drosophila ananassae FBgn0094715 I 0.979
GH18982 Drosophila grimshawi FBgn0126449 I 0.971
GK12850 Drosophila willistoni FBgn0214859 I 0.964
GI22407 Drosophila mojavensis FBgn0145135 I 0.957
AGAP001993 Anopheles gambiae AGAP001993 I 0.929
nasonia_NCBI_hmm958624 Nasonia vitripennis nasonia_NCBI_hmm958624 I 0.914
CPIJ006948 Culex quinquefasciatus CPIJ006948 I 0.907
CpipJ_CPIJ006948 Culex pipiens CpipJ_CPIJ006948 I 0.907
AAEL006057 Aedes aegypti AAEL006057 I 0.900
DGIL_AUG5s2560g3t3 Acyrtosiphon pisum DGIL_AUG5s2560g3t3 I 0.837
amel4_ncbi_hmm946 Apis mellifera amel4_ncbi_hmm946 I 0.829
PHUM361200 Pediculus humanus PHUM361200 I 0.823
e_gw1.7.478.1 Daphnia pulex e_gw1.7.478.1 I 0.773
msi Drosophila simulans FBgn0025033 I 0.702