CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GG10948
(
Drosophila erecta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0103251
T43322_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.986
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0129494
RRM
203
273
IFCGDLGNDVNDEVLTRTFNKFASFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRYVGSRPIK
Links
Other
RRM
family RBPs
Other
Drosophila erecta
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF11626
Drosophila ananassae
FBgn0088666
I
0.986
GM10617
Drosophila sechellia
FBgn0165563
I
0.986
CG2931
Drosophila melanogaster
FBgn0037342
D
0.986
GE24162
Drosophila yakuba
FBgn0241294
I
0.986
GH22277
Drosophila grimshawi
FBgn0129737
I
0.972
GA15528-RA
Drosophila pseudoobscura
FBgn0075545
I
0.972
GK12952
Drosophila willistoni
FBgn0214961
I
0.972
GI23084
Drosophila mojavensis
FBgn0145811
I
0.972
GL22151
Drosophila persimilis
FBgn0159743
I
0.972
GD19605
Drosophila simulans
FBgn0191097
I
0.972
GJ22705
Drosophila virilis
FBgn0209809
I
0.972
AAEL010642
Aedes aegypti
AAEL010642
I
0.873
AGAP010200
Anopheles gambiae
AGAP010200
I
0.859
BGIBMGA005213
Bombyx mori
BGIBMGA005213
I
0.803
PHUM106890
Pediculus humanus
PHUM106890
I
0.803
amel4_ncbi_hmm2520
Apis mellifera
amel4_ncbi_hmm2520
I
0.775
CPIJ005997
Culex quinquefasciatus
CPIJ005997
I
0.761
CpipJ_CPIJ005997
Culex pipiens
CpipJ_CPIJ005997
I
0.761
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.732
Minc13155
Meloidogyne incognita
Minc13155
I
0.732
DGIL_AUG5s15230g22t1
Acyrtosiphon pisum
DGIL_AUG5s15230g22t1
I
0.732
e_gw1.156.67.1
Physcomitrella patens
e_gw1.156.67.1
I
0.718
rbm42
Danio rerio
ENSDARG00000039910
I
0.704