GA15528-RA (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0075545 T43140_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.986
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.718
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0284407 RRM 201 271

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GK12952 Drosophila willistoni FBgn0214961 I 1.000
GL22151 Drosophila persimilis FBgn0159743 I 1.000
GH22277 Drosophila grimshawi FBgn0129737 I 1.000
GJ22705 Drosophila virilis FBgn0209809 I 1.000
GF11626 Drosophila ananassae FBgn0088666 I 0.986
GE24162 Drosophila yakuba FBgn0241294 I 0.986
CG2931 Drosophila melanogaster FBgn0037342 D 0.986
GM10617 Drosophila sechellia FBgn0165563 I 0.986
GD19605 Drosophila simulans FBgn0191097 I 0.972
GG10948 Drosophila erecta FBgn0103251 I 0.972
GI23084 Drosophila mojavensis FBgn0145811 I 0.972
AAEL010642 Aedes aegypti AAEL010642 I 0.901
AGAP010200 Anopheles gambiae AGAP010200 I 0.887
BGIBMGA005213 Bombyx mori BGIBMGA005213 I 0.817
PHUM106890 Pediculus humanus PHUM106890 I 0.789
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.775
CPIJ005997 Culex quinquefasciatus CPIJ005997 I 0.761
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.761
CpipJ_CPIJ005997 Culex pipiens CpipJ_CPIJ005997 I 0.761
Minc13155 Meloidogyne incognita Minc13155 I 0.746
DGIL_AUG5s15230g22t1 Acyrtosiphon pisum DGIL_AUG5s15230g22t1 I 0.732
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.718
RBM42 Procavia capensis ENSPCAG00000013053 I 0.718
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.718
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.718
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.718
Rbm42 Mus musculus ENSMUSG00000036733 I 0.718
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.718
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.718
RBM42 Sus scrofa ENSSSCG00000002905 I 0.718
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.718
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.718
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.718
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.718
RBM42 Sorex araneus ENSSARG00000010724 I 0.718
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.718
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.718
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.718
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.718
RBM42 Canis familiaris ENSCAFG00000006925 I 0.718
RBM42 Microcebus murinus ENSMICG00000009880 I 0.718
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.718
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.718
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.718
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.718
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.718
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.718
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.718
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.718
LOC100051102 Equus caballus ENSECAG00000018215 I 0.718
RBM42 Homo sapiens ENSG00000126254 D 0.718
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.704
AAI29698 Xenopus laevis AAI29698 I 0.704
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.704
rbm42 Danio rerio ENSDARG00000039910 I 0.704
A2VDB3 Xenopus laevis A2VDB3 I 0.704