CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Minc13155
(
Meloidogyne incognita
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Minc13155
T57845_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.746
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.718
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc13155a
RRM
180
250
IFCGDLGNEVSDELLAKAFRKFPSFQKAKVCRDSRTNKSKGFGFVSFKNQEDFIRAMKEMDGKYVGNRPIK
Minc13155c
RRM
153
223
IFCGDLGNEVSDELLAKAFRKFPSFQKAKVCRDSRTNKSKGFGFVSFKNQEDFIRAMKEMDGKYVGNRPIK
Minc13155d
RRM
137
207
IFCGDLGNEVSDELLAKAFRKFPSFQKAKVCRDSRTNKSKGFGFVSFKNQEDFIRAMKEMDGKYVGNRPIK
Minc13155e
RRM
28
98
IFCGDLGNEVSDELLAKAFRKFPSFQKAKVCRDSRTNKSKGFGFVSFKNQEDFIRAMKEMDGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Meloidogyne incognita
RBPs
66 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
WUBG_05387
Wuchereria bancrofti
WUBG_05387
I
0.859
Ppa-tag-262
Pristionchus pacificus
PPA14507
I
0.859
Bm1_40380
Brugia malayi
Bm1_40380
I
0.859
LOAG_04208
Loa loa
LOAG_04208
I
0.859
CRE29329
Caenorhabditis remanei
CRE29329
I
0.845
tag-262
Caenorhabditis elegans
Y54H5A.3
I
0.845
CBG21313
Caenorhabditis briggsae
CBG21313
I
0.845
CBN12017
Caenorhabditis brenneri
CBN12017
I
0.845
CJA09414
Caenorhabditis japonica
CJA09414
I
0.831
AAEL010642
Aedes aegypti
AAEL010642
I
0.775
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.761
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.761
AGAP010200
Anopheles gambiae
AGAP010200
I
0.761
GM10617
Drosophila sechellia
FBgn0165563
I
0.746
CG2931
Drosophila melanogaster
FBgn0037342
D
0.746
GJ22705
Drosophila virilis
FBgn0209809
I
0.746
GH22277
Drosophila grimshawi
FBgn0129737
I
0.746
GK12952
Drosophila willistoni
FBgn0214961
I
0.746
GA15528-RA
Drosophila pseudoobscura
FBgn0075545
I
0.746
GF11626
Drosophila ananassae
FBgn0088666
I
0.746
GL22151
Drosophila persimilis
FBgn0159743
I
0.746
e_gw1.16.225.1
Lottia gigantea
e_gw1.16.225.1
I
0.746
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.746
GE24162
Drosophila yakuba
FBgn0241294
I
0.746
BGIBMGA005213
Bombyx mori
BGIBMGA005213
I
0.746
amel4_ncbi_hmm2520
Apis mellifera
amel4_ncbi_hmm2520
I
0.746
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.746
PTSG_04228
Salpingoeca rosetta
PTSG_04228
I
0.732
GG10948
Drosophila erecta
FBgn0103251
I
0.732
PHUM106890
Pediculus humanus
PHUM106890
I
0.732
GI23084
Drosophila mojavensis
FBgn0145811
I
0.732
GD19605
Drosophila simulans
FBgn0191097
I
0.732
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.718
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.718
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.718
RBM42
Sorex araneus
ENSSARG00000010724
I
0.718
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.718
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.718
RBM42
Homo sapiens
ENSG00000126254
D
0.718
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.718
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.718
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.718
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.718
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.718
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.718
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.718
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.718
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.718
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.718
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.718
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.718
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.718
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.718
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.718
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.718
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.718
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.718
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.718
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.718
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.718
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.704
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.704
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.704
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.704
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.704