GJ19364 (Drosophila virilis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0206507 T44087_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.933
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0233781 RRM 95 169
FBpp0233781 RRM 272 339
FBpp0233781 RRM 401 462

Links

Other RRM family RBPs
Other Drosophila virilis RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GI14308 Drosophila mojavensis FBgn0137061 I 0.938
GH12033 Drosophila grimshawi FBgn0119512 I 0.938
GF19596 Drosophila ananassae FBgn0096603 I 0.933
GG19328 Drosophila erecta FBgn0111532 I 0.933
GL15893 Drosophila persimilis FBgn0153497 I 0.933
GM13406 Drosophila sechellia FBgn0168337 I 0.933
GE15975 Drosophila yakuba FBgn0233531 I 0.933
U2af50 Drosophila melanogaster FBgn0005411 D 0.933
GD24494 Drosophila simulans FBgn0195829 I 0.933
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.933
GK10063 Drosophila willistoni FBgn0212078 I 0.933
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.865
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.865
AAEL002818 Aedes aegypti AAEL002818 I 0.865
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.865
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.856
AGAP002908 Anopheles gambiae AGAP002908 I 0.846
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.846
PHUM460480 Pediculus humanus PHUM460480 I 0.822
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.812
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.812
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.812
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.769
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.740
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.740
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.736
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.736
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.736
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.736
LOC100050729 Equus caballus ENSECAG00000010110 I 0.736
U2AF2 Homo sapiens ENSG00000063244 D 0.736
AAH44032 Xenopus laevis AAH44032 I 0.736
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.736
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.736
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.736
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.736
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.736
U2af2 Mus musculus ENSMUSG00000030435 I 0.736
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.731
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.729
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.729
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.721
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.716
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.716
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.716
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.716
u2af2a Danio rerio ENSDARG00000012505 I 0.712
u2af2b Danio rerio ENSDARG00000011740 I 0.707