GK13897 (Drosophila willistoni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0215904 T44171_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp1-like
M121_0.6 		Drosophila melanogaster AUCADCR RNAcompete
Ray et al.(2013)
RNCMPT00127 		0.970
Rbp1
M336_0.6 		Drosophila melanogaster Sequence logo not available AUCYNNA SELEX
Cook et al.(2011)
804_7664738.1 		0.939
Rbp1
M335_0.6 		Drosophila melanogaster Sequence logo not available DCADCUUUA SELEX
Cook et al.(2011)
804_7664738 		0.939
Rbp1
M056_0.6 		Drosophila melanogaster WCAACRR RNAcompete
Ray et al.(2013)
RNCMPT00058 		0.939
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0243040 RRM 13 78

Links

Other RRM family RBPs
Other Drosophila willistoni RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GI23736 Drosophila mojavensis FBgn0146461 I 0.985
GH24472 Drosophila grimshawi FBgn0131928 I 0.970
GA15173-RA Drosophila pseudoobscura FBgn0075198 I 0.970
GG19507 Drosophila erecta FBgn0111709 I 0.970
GF19500 Drosophila ananassae FBgn0096507 I 0.970
Rbp1-like Drosophila melanogaster FBgn0030479 D 0.970
GF17902 Drosophila ananassae FBgn0094920 I 0.970
GK16401 Drosophila willistoni FBgn0218403 I 0.970
GI15337 Drosophila mojavensis FBgn0138086 I 0.970
GL26725 Drosophila persimilis FBgn0164306 I 0.970
GE16161 Drosophila yakuba FBgn0233705 I 0.970
GJ14774 Drosophila virilis FBgn0201978 I 0.955
GG17683 Drosophila erecta FBgn0109905 I 0.939
GE26048 Drosophila yakuba FBgn0243090 I 0.939
GM23896 Drosophila sechellia FBgn0178761 I 0.939
GJ10582 Drosophila virilis FBgn0197862 I 0.939
Rbp1 Drosophila melanogaster FBgn0260944 D 0.939
GD18708 Drosophila simulans FBgn0190229 I 0.939
AAEL001356 Aedes aegypti AAEL001356 I 0.894
nasonia_NCBI_hmm78264 Nasonia vitripennis nasonia_NCBI_hmm78264 I 0.894
AGAP007325 Anopheles gambiae AGAP007325 I 0.894
CPIJ003074 Culex quinquefasciatus CPIJ003074 I 0.879
CpipJ_CPIJ003074 Culex pipiens CpipJ_CPIJ003074 I 0.879
PHUM357390 Pediculus humanus PHUM357390 I 0.879
amel4_ncbi_hmm65494 Apis mellifera amel4_ncbi_hmm65494 I 0.879
amel4_ncbi_hmm63829 Apis mellifera amel4_ncbi_hmm63829 I 0.879
PHUM565080 Pediculus humanus PHUM565080 I 0.788
PASA_GEN_2500115 Daphnia pulex PASA_GEN_2500115 I 0.788
nasonia_NCBI_hmm124154 Nasonia vitripennis nasonia_NCBI_hmm124154 I 0.773
ENSCING00000011663 Ciona intestinalis ENSCING00000011663 I 0.758
ENSCSAVG00000002676 Ciona savignyi ENSCSAVG00000002676 I 0.727
srsf3a Danio rerio ENSDARG00000025397 I 0.712
estExt_fgenesh1_pm.C_10147 Daphnia pulex estExt_fgenesh1_pm.C_10147 I 0.712
e_gw1.25.110.1 Daphnia pulex e_gw1.25.110.1 N 0.712