GE16161 (Drosophila yakuba)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0233705 T44302_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp1-like
M121_0.6 		Drosophila melanogaster AUCADCR RNAcompete
Ray et al.(2013)
RNCMPT00127 		1.000
Rbp1
M336_0.6 		Drosophila melanogaster Sequence logo not available AUCYNNA SELEX
Cook et al.(2011)
804_7664738.1 		0.939
Rbp1
M335_0.6 		Drosophila melanogaster Sequence logo not available DCADCUUUA SELEX
Cook et al.(2011)
804_7664738 		0.939
Rbp1
M056_0.6 		Drosophila melanogaster WCAACRR RNAcompete
Ray et al.(2013)
RNCMPT00058 		0.939
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0261171 RRM 13 78

Links

Other RRM family RBPs
Other Drosophila yakuba RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GG19507 Drosophila erecta FBgn0111709 I 1.000
GH24472 Drosophila grimshawi FBgn0131928 I 1.000
GF19500 Drosophila ananassae FBgn0096507 I 1.000
GA15173-RA Drosophila pseudoobscura FBgn0075198 I 1.000
Rbp1-like Drosophila melanogaster FBgn0030479 D 1.000
GI15337 Drosophila mojavensis FBgn0138086 I 1.000
GL26725 Drosophila persimilis FBgn0164306 I 1.000
GK16401 Drosophila willistoni FBgn0218403 I 1.000
GJ14774 Drosophila virilis FBgn0201978 I 0.985
GF17902 Drosophila ananassae FBgn0094920 I 0.970
GK13897 Drosophila willistoni FBgn0215904 I 0.970
GI23736 Drosophila mojavensis FBgn0146461 I 0.955
GG17683 Drosophila erecta FBgn0109905 I 0.939
GD18708 Drosophila simulans FBgn0190229 I 0.939
GM23896 Drosophila sechellia FBgn0178761 I 0.939
Rbp1 Drosophila melanogaster FBgn0260944 D 0.939
GJ10582 Drosophila virilis FBgn0197862 I 0.939
GE26048 Drosophila yakuba FBgn0243090 I 0.939
nasonia_NCBI_hmm78264 Nasonia vitripennis nasonia_NCBI_hmm78264 I 0.924
amel4_ncbi_hmm63829 Apis mellifera amel4_ncbi_hmm63829 I 0.909
amel4_ncbi_hmm65494 Apis mellifera amel4_ncbi_hmm65494 I 0.909
PHUM357390 Pediculus humanus PHUM357390 I 0.909
AAEL001356 Aedes aegypti AAEL001356 I 0.909
AGAP007325 Anopheles gambiae AGAP007325 I 0.909
CPIJ003074 Culex quinquefasciatus CPIJ003074 I 0.894
CpipJ_CPIJ003074 Culex pipiens CpipJ_CPIJ003074 I 0.894
PHUM565080 Pediculus humanus PHUM565080 I 0.818
PASA_GEN_2500115 Daphnia pulex PASA_GEN_2500115 I 0.788
nasonia_NCBI_hmm124154 Nasonia vitripennis nasonia_NCBI_hmm124154 I 0.742
estExt_fgenesh1_pm.C_10147 Daphnia pulex estExt_fgenesh1_pm.C_10147 I 0.742
ENSCING00000011663 Ciona intestinalis ENSCING00000011663 I 0.727
srsf3a Danio rerio ENSDARG00000025397 I 0.727
SRSF3 Spermophilus tridecemlineatus ENSSTOG00000014280 I 0.712
Sfrs3 Rattus norvegicus ENSRNOG00000000520 I 0.712
SRSF3 Pteropus vampyrus ENSPVAG00000014621 I 0.712
SRSF3 Tupaia belangeri ENSTBEG00000012272 I 0.712
SRSF3 Sus scrofa ENSSSCG00000001564 I 0.712
SRSF3 Tursiops truncatus ENSTTRG00000013447 I 0.712
XR_022443.1 Pan troglodytes ENSPTRG00000018106 I 0.712
srsf3 Xenopus tropicalis ENSXETG00000001701 I 0.712
SRSF3 Vicugna pacos ENSVPAG00000005481 I 0.712
SRSF3 Tetraodon nigroviridis ENSTNIG00000001003 I 0.712
SFRS3 Taeniopygia guttata ENSTGUG00000000928 I 0.712
SRSF3 Macaca mulatta ENSMMUG00000014306 I 0.712
ENSDORG00000012283 Dipodomys ordii ENSDORG00000012283 I 0.712
srsf3b Danio rerio ENSDARG00000059360 I 0.712
LOC100053336 Equus caballus ENSECAG00000018741 I 0.712
SRSF3 Echinops telfairi ENSETEG00000010117 I 0.712
SRSF3 Felis catus ENSFCAG00000001084 I 0.712
SRSF3 Cavia porcellus ENSCPOG00000003722 I 0.712
LOC100408013 Callithrix jacchus ENSCJAG00000016062 I 0.712
AAH46661 Xenopus laevis AAH46661 I 0.712
Ame_R002060 Ailuropoda melanoleuca Ame_R002060 I 0.712
SRSF3 Anolis carolinensis ENSACAG00000016637 I 0.712
SFRS3_BOVIN Bos taurus ENSBTAG00000040006 I 0.712
Q9XSU6_CANFA Canis familiaris ENSCAFG00000001414 I 0.712
SRSF3 Homo sapiens ENSG00000112081 I 0.712
SFRS3 Gallus gallus ENSGALG00000000533 I 0.712
SRSF3 Oryctolagus cuniculus ENSOCUG00000006684 I 0.712
Gm12355 Mus musculus ENSMUSG00000078134 I 0.712
SRSF3 Ochotona princeps ENSOPRG00000006006 I 0.712
SRSF3 Oryzias latipes ENSORLG00000000292 I 0.712
SRSF3 Oryzias latipes ENSORLG00000020054 I 0.712
Srsf3 Mus musculus ENSMUSG00000071172 I 0.712
SRSF3 Monodelphis domestica ENSMODG00000013539 I 0.712
SRSF3 Gorilla gorilla ENSGGOG00000017186 I 0.712
ENSLAFG00000018193 Loxodonta africana ENSLAFG00000018193 I 0.712
SRSF3 Meleagris gallopavo ENSMGAG00000002503 I 0.712
SRSF3 Microcebus murinus ENSMICG00000004674 I 0.712
ENSPPYG00000016548 Pongo pygmaeus ENSPPYG00000016548 I 0.712