XM_002886041.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.3__3274__AT2G16940.1 T44526_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__3274__AT2G16940.1 RRM 184 253
fgenesh2_kg.3__3274__AT2G16940.1 RRM 287 356
fgenesh2_kg.3__3274__AT2G16940.1 RRM 483 538

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G16940 Arabidopsis thaliana AT2G16940-TAIR-G N 0.970
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.821
30183.m001297 Ricinus communis 30183.m001297 N 0.816
Glyma10g42890.1 Glycine max Glyma10g42890.1 N 0.806
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.797
PK01525.1 Cannabis sativa PK01525.1 N 0.796
Glyma20g24130.1 Glycine max Glyma20g24130.1 N 0.796
ppa003064m Prunus persica ppa003064m N 0.781
Cucsa.370400 Cucumis sativus Cucsa.370400 N 0.781
mgf012385m Mimulus guttatus mgf012385m N 0.777
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.777
AC233901.1_FG001 Zea mays AC233901.1_FG001 N 0.772
SB01G046740 Sorghum bicolor Sb01g046740 N 0.772
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.772
MDP0000319817 Malus x domestica MDP0000319817 N 0.760
BRADI3G27480 Brachypodium distachyon BRADI3G27480 N 0.751
GRMZM2G071589 Zea mays GRMZM2G071589 N 0.751
GRMZM2G076597 Zea mays GRMZM2G076597 N 0.751
SB01G021020 Sorghum bicolor Sb01g021020 N 0.751
ppa002854m Prunus persica ppa002854m N 0.741
Cucsa.101320 Cucumis sativus Cucsa.101320 N 0.741
Glyma06g15370.1 Glycine max Glyma06g15370.1 N 0.741
XM_002873382.1 Arabidopsis lyrata Al_scaffold_0006_891 N 0.737
Glyma08g15370.1 Glycine max Glyma08g15370.1 N 0.736
Medtr4g141620 Medicago truncatula Medtr4g141620 N 0.736
PK20903.1 Cannabis sativa PK20903.1 N 0.731
AT5G09880 Arabidopsis thaliana AT5G09880-TAIR-G N 0.727
B9H6Q0_POPTR Populus trichocarpa POPTR_0005s19200 N 0.727
GSVIVG00022281001 Vitis vinifera GSVIVG00022281001 N 0.726
Glyma05g32080.1 Glycine max Glyma05g32080.1 N 0.721