PK01525.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK01525.1 T31623_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK01525.1 RRM 31 93
PK01525.1 RRM 128 197
PK01525.1 RRM 335 390

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa003064m Prunus persica ppa003064m N 0.878
30183.m001297 Ricinus communis 30183.m001297 N 0.873
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.873
MDP0000319817 Malus x domestica MDP0000319817 N 0.852
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.847
Glyma10g42890.1 Glycine max Glyma10g42890.1 N 0.847
Glyma20g24130.1 Glycine max Glyma20g24130.1 N 0.832
XM_002886041.1 Arabidopsis lyrata fgenesh2_kg.3__3274__AT2G16940.1 N 0.796
AT2G16940 Arabidopsis thaliana AT2G16940-TAIR-G N 0.793
SB01G046740 Sorghum bicolor Sb01g046740 N 0.792
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.792
AC233901.1_FG001 Zea mays AC233901.1_FG001 N 0.782
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.782
mgf012385m Mimulus guttatus mgf012385m N 0.776
Cucsa.370400 Cucumis sativus Cucsa.370400 N 0.776
SB01G021020 Sorghum bicolor Sb01g021020 N 0.772
GRMZM2G071589 Zea mays GRMZM2G071589 N 0.772
BRADI3G27480 Brachypodium distachyon BRADI3G27480 N 0.766
GRMZM2G076597 Zea mays GRMZM2G076597 N 0.766
XM_002873382.1 Arabidopsis lyrata Al_scaffold_0006_891 N 0.737
Glyma06g15370.1 Glycine max Glyma06g15370.1 N 0.736
PK20903.1 Cannabis sativa PK20903.1 N 0.736
ppa002854m Prunus persica ppa002854m N 0.731
Glyma08g15370.1 Glycine max Glyma08g15370.1 N 0.731
Glyma05g32080.1 Glycine max Glyma05g32080.1 N 0.726
POPTR_0009s13940 Populus trichocarpa POPTR_0009s13940 N 0.725
Cucsa.101320 Cucumis sativus Cucsa.101320 N 0.721
PDK_20s1450251g001 Phoenix dactylifera PDK_20s1450251g001 N 0.720
AT5G09880 Arabidopsis thaliana AT5G09880-TAIR-G N 0.717
Medtr4g141620 Medicago truncatula Medtr4g141620 N 0.716
ppa018661m Prunus persica ppa018661m N 0.714
GSVIVG00022281001 Vitis vinifera GSVIVG00022281001 N 0.711
B9H1K1_POPTR Populus trichocarpa POPTR_0004s18320 N 0.709
B9H6Q0_POPTR Populus trichocarpa POPTR_0005s19200 N 0.707
estExt_Genewise1.C_320014 Selaginella moellendorfii estExt_Genewise1.C_320014 N 0.707