LOC_Os09g29980 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os09g29980 T45132_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os09g29980.1 RRM 187 257
LOC_Os09g29980.2 RRM 187 257

Links

Other RRM family RBPs
Other Oryza sativa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE030316 Oryza indica BGIOSIBCE030316 N 1.000
GRMZM2G475495 Zea mays GRMZM2G475495 N 0.958
GRMZM2G131957 Zea mays GRMZM2G131957 N 0.944
BRADI4G33020 Brachypodium distachyon BRADI4G33020 N 0.930
GRMZM2G107163 Zea mays GRMZM2G107163 N 0.915
SB07G028810 Sorghum bicolor Sb07g028810 N 0.901
BGIOSIBCE028312 Oryza indica BGIOSIBCE028312 N 0.901
LOC_Os08g38240 Oryza sativa LOC_Os08g38240 N 0.901
29629.m001380 Ricinus communis 29629.m001380 N 0.887
cassava7046.valid.m1 Manihot esculenta cassava7046.valid.m1 N 0.873
BRADI3G38990 Brachypodium distachyon BRADI3G38990 N 0.873
cassava7045.valid.m1 Manihot esculenta cassava7045.valid.m1 N 0.873
PK28815.1 Cannabis sativa PK28815.1 N 0.845
Glyma08g44170.1 Glycine max Glyma08g44170.1 N 0.845
Glyma08g44150.1 Glycine max Glyma08g44150.1 N 0.845
MDP0000138972 Malus x domestica MDP0000138972 N 0.831
XM_002866061.1 Arabidopsis lyrata fgenesh2_kg.8__1470__AT5G55670.1 N 0.831
ppa002096m Prunus persica ppa002096m N 0.831
MDP0000643975 Malus x domestica MDP0000643975 N 0.831
chr6.CM0245.280.nd Lotus japonicus chr6.CM0245.280.nd N 0.831
mgf006948m Mimulus guttatus mgf006948m N 0.831
Glyma18g08610.1 Glycine max Glyma18g08610.1 N 0.831
Glyma18g08590.1 Glycine max Glyma18g08590.1 N 0.831
Cucsa.059360 Cucumis sativus Cucsa.059360 N 0.817
MDP0000551492 Malus x domestica MDP0000551492 N 0.803
MDP0000162382 Malus x domestica MDP0000162382 N 0.803
29929.m004777 Ricinus communis 29929.m004777 N 0.803
AT5G55670 Arabidopsis thaliana AT5G55670-TAIR-G N 0.803
cassava35777.valid.m1 Manihot esculenta cassava35777.valid.m1 N 0.789
B9HLD1_POPTR Populus trichocarpa POPTR_0008s18280 N 0.775
ppa002814m Prunus persica ppa002814m N 0.775
B9HTF7_POPTR Populus trichocarpa POPTR_0010s06150 N 0.775
MDP0000491894 Malus x domestica MDP0000491894 N 0.746
PK06988.1 Cannabis sativa PK06988.1 N 0.732
PDK_20s1577201g001 Phoenix dactylifera PDK_20s1577201g001 N 0.732
MDP0000642690 Malus x domestica MDP0000642690 N 0.718
e_gw1.138.6.1 Physcomitrella patens e_gw1.138.6.1 N 0.704
e_gw1.42.153.1 Physcomitrella patens e_gw1.42.153.1 N 0.704