B9HTF7_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0010s06150 T45592_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s06150.1 RRM 174 244
POPTR_0010s06150.2 RRM 174 244

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HLD1_POPTR Populus trichocarpa POPTR_0008s18280 N 0.958
cassava35777.valid.m1 Manihot esculenta cassava35777.valid.m1 N 0.901
29929.m004777 Ricinus communis 29929.m004777 N 0.887
PDK_20s1577201g001 Phoenix dactylifera PDK_20s1577201g001 N 0.831
MDP0000642690 Malus x domestica MDP0000642690 N 0.831
ppa002814m Prunus persica ppa002814m N 0.831
Glyma08g44170.1 Glycine max Glyma08g44170.1 N 0.817
MDP0000491894 Malus x domestica MDP0000491894 N 0.817
PK06988.1 Cannabis sativa PK06988.1 N 0.803
GRMZM2G131957 Zea mays GRMZM2G131957 N 0.803
cassava7045.valid.m1 Manihot esculenta cassava7045.valid.m1 N 0.789
cassava7046.valid.m1 Manihot esculenta cassava7046.valid.m1 N 0.789
29629.m001380 Ricinus communis 29629.m001380 N 0.789
LOC_Os09g29980 Oryza sativa LOC_Os09g29980 N 0.775
chr6.CM0245.280.nd Lotus japonicus chr6.CM0245.280.nd N 0.775
Glyma18g08590.1 Glycine max Glyma18g08590.1 N 0.775
BGIOSIBCE030316 Oryza indica BGIOSIBCE030316 N 0.775
Glyma08g44150.1 Glycine max Glyma08g44150.1 N 0.775
Glyma18g08610.1 Glycine max Glyma18g08610.1 N 0.775
GRMZM2G107163 Zea mays GRMZM2G107163 N 0.775
PK28815.1 Cannabis sativa PK28815.1 N 0.761
GRMZM2G475495 Zea mays GRMZM2G475495 N 0.761
SB07G028810 Sorghum bicolor Sb07g028810 N 0.761
mgf006948m Mimulus guttatus mgf006948m N 0.761
BGIOSIBCE028312 Oryza indica BGIOSIBCE028312 N 0.746
ppa002096m Prunus persica ppa002096m N 0.746
MDP0000138972 Malus x domestica MDP0000138972 N 0.746
LOC_Os08g38240 Oryza sativa LOC_Os08g38240 N 0.746
MDP0000643975 Malus x domestica MDP0000643975 N 0.746
BRADI4G33020 Brachypodium distachyon BRADI4G33020 N 0.746
XM_002866061.1 Arabidopsis lyrata fgenesh2_kg.8__1470__AT5G55670.1 N 0.732
MDP0000162382 Malus x domestica MDP0000162382 N 0.732
MDP0000551492 Malus x domestica MDP0000551492 N 0.732
Cucsa.059360 Cucumis sativus Cucsa.059360 N 0.732
BRADI3G38990 Brachypodium distachyon BRADI3G38990 N 0.718
AT5G55670 Arabidopsis thaliana AT5G55670-TAIR-G N 0.704
GSVIVG00000588001 Vitis vinifera GSVIVG00000588001 N 0.704