cassava35777.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava35777.valid.m1 T49329_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava35777.valid.m1 RRM 230 300

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29929.m004777 Ricinus communis 29929.m004777 N 0.930
ppa002814m Prunus persica ppa002814m N 0.901
B9HTF7_POPTR Populus trichocarpa POPTR_0010s06150 N 0.901
MDP0000642690 Malus x domestica MDP0000642690 N 0.887
B9HLD1_POPTR Populus trichocarpa POPTR_0008s18280 N 0.887
MDP0000491894 Malus x domestica MDP0000491894 N 0.887
PK06988.1 Cannabis sativa PK06988.1 N 0.873
PDK_20s1577201g001 Phoenix dactylifera PDK_20s1577201g001 N 0.859
cassava7045.valid.m1 Manihot esculenta cassava7045.valid.m1 N 0.831
Glyma08g44170.1 Glycine max Glyma08g44170.1 N 0.831
29629.m001380 Ricinus communis 29629.m001380 N 0.831
mgf006948m Mimulus guttatus mgf006948m N 0.831
cassava7046.valid.m1 Manihot esculenta cassava7046.valid.m1 N 0.831
Glyma18g08590.1 Glycine max Glyma18g08590.1 N 0.817
Glyma18g08610.1 Glycine max Glyma18g08610.1 N 0.817
GRMZM2G131957 Zea mays GRMZM2G131957 N 0.817
Glyma08g44150.1 Glycine max Glyma08g44150.1 N 0.817
PK28815.1 Cannabis sativa PK28815.1 N 0.803
LOC_Os09g29980 Oryza sativa LOC_Os09g29980 N 0.789
GRMZM2G107163 Zea mays GRMZM2G107163 N 0.789
BGIOSIBCE030316 Oryza indica BGIOSIBCE030316 N 0.789
MDP0000138972 Malus x domestica MDP0000138972 N 0.789
chr6.CM0245.280.nd Lotus japonicus chr6.CM0245.280.nd N 0.789
ppa002096m Prunus persica ppa002096m N 0.789
MDP0000643975 Malus x domestica MDP0000643975 N 0.789
SB07G028810 Sorghum bicolor Sb07g028810 N 0.775
Cucsa.059360 Cucumis sativus Cucsa.059360 N 0.775
GRMZM2G475495 Zea mays GRMZM2G475495 N 0.775
XM_002866061.1 Arabidopsis lyrata fgenesh2_kg.8__1470__AT5G55670.1 N 0.775
LOC_Os08g38240 Oryza sativa LOC_Os08g38240 N 0.761
GSVIVG00000588001 Vitis vinifera GSVIVG00000588001 N 0.761
BGIOSIBCE028312 Oryza indica BGIOSIBCE028312 N 0.761
MDP0000162382 Malus x domestica MDP0000162382 N 0.761
BRADI4G33020 Brachypodium distachyon BRADI4G33020 N 0.761
MDP0000551492 Malus x domestica MDP0000551492 N 0.761
e_gw1.138.6.1 Physcomitrella patens e_gw1.138.6.1 N 0.746
AT5G55670 Arabidopsis thaliana AT5G55670-TAIR-G N 0.746
e_gw1.42.153.1 Physcomitrella patens e_gw1.42.153.1 N 0.746
BRADI3G38990 Brachypodium distachyon BRADI3G38990 N 0.732
AT1G13190 Arabidopsis thaliana AT1G13190-TAIR-G N 0.711
XM_002889946.1 Arabidopsis lyrata fgenesh2_kg.1__1426__AT1G13190.1 N 0.700