cassava7045.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava7045.valid.m1 T49462_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava7045.valid.m1 RRM 221 291

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava7046.valid.m1 Manihot esculenta cassava7046.valid.m1 N 1.000
29629.m001380 Ricinus communis 29629.m001380 N 0.958
ppa002096m Prunus persica ppa002096m N 0.915
PK28815.1 Cannabis sativa PK28815.1 N 0.915
MDP0000138972 Malus x domestica MDP0000138972 N 0.915
MDP0000643975 Malus x domestica MDP0000643975 N 0.915
Cucsa.059360 Cucumis sativus Cucsa.059360 N 0.915
Glyma08g44170.1 Glycine max Glyma08g44170.1 N 0.901
Glyma08g44150.1 Glycine max Glyma08g44150.1 N 0.901
chr6.CM0245.280.nd Lotus japonicus chr6.CM0245.280.nd N 0.901
XM_002866061.1 Arabidopsis lyrata fgenesh2_kg.8__1470__AT5G55670.1 N 0.887
BRADI4G33020 Brachypodium distachyon BRADI4G33020 N 0.887
Glyma18g08590.1 Glycine max Glyma18g08590.1 N 0.887
SB07G028810 Sorghum bicolor Sb07g028810 N 0.887
AT5G55670 Arabidopsis thaliana AT5G55670-TAIR-G N 0.887
MDP0000551492 Malus x domestica MDP0000551492 N 0.887
Glyma18g08610.1 Glycine max Glyma18g08610.1 N 0.887
GRMZM2G475495 Zea mays GRMZM2G475495 N 0.887
mgf006948m Mimulus guttatus mgf006948m N 0.887
MDP0000162382 Malus x domestica MDP0000162382 N 0.887
BGIOSIBCE030316 Oryza indica BGIOSIBCE030316 N 0.873
GRMZM2G131957 Zea mays GRMZM2G131957 N 0.873
LOC_Os09g29980 Oryza sativa LOC_Os09g29980 N 0.873
BGIOSIBCE028312 Oryza indica BGIOSIBCE028312 N 0.859
LOC_Os08g38240 Oryza sativa LOC_Os08g38240 N 0.859
GRMZM2G107163 Zea mays GRMZM2G107163 N 0.859
BRADI3G38990 Brachypodium distachyon BRADI3G38990 N 0.831
29929.m004777 Ricinus communis 29929.m004777 N 0.831
cassava35777.valid.m1 Manihot esculenta cassava35777.valid.m1 N 0.831
ppa002814m Prunus persica ppa002814m N 0.803
MDP0000491894 Malus x domestica MDP0000491894 N 0.789
B9HLD1_POPTR Populus trichocarpa POPTR_0008s18280 N 0.789
B9HTF7_POPTR Populus trichocarpa POPTR_0010s06150 N 0.789
PDK_20s1577201g001 Phoenix dactylifera PDK_20s1577201g001 N 0.775
PK06988.1 Cannabis sativa PK06988.1 N 0.761
MDP0000642690 Malus x domestica MDP0000642690 N 0.761
e_gw1.138.6.1 Physcomitrella patens e_gw1.138.6.1 N 0.718
e_gw1.42.153.1 Physcomitrella patens e_gw1.42.153.1 N 0.718