POPTR_0009s13940 (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0009s13940 T45584_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s13940.1 RRM 1 39
POPTR_0009s13940.1 RRM 72 141
POPTR_0009s13940.1 RRM 276 331

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9H1K1_POPTR Populus trichocarpa POPTR_0004s18320 N 0.952
PDK_20s1450251g001 Phoenix dactylifera PDK_20s1450251g001 N 0.861
PDK_20s1383761g001 Phoenix dactylifera PDK_20s1383761g001 N 0.813
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.799
estExt_gwp_gw1.C_3320014 Physcomitrella patens estExt_gwp_gw1.C_3320014 N 0.795
estExt_fgenesh1_pg.C_2070055 Physcomitrella patens estExt_fgenesh1_pg.C_2070055 N 0.789
LOC_Os10g30370 Oryza sativa LOC_Os10g30370 N 0.783
30183.m001297 Ricinus communis 30183.m001297 N 0.783
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.763
PK01525.1 Cannabis sativa PK01525.1 N 0.725
ppa003064m Prunus persica ppa003064m N 0.714
MDP0000319817 Malus x domestica MDP0000319817 N 0.704