PDK_20s1450251g001 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1450251g001 T58148_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1450251g001 RRM 1 39
PDK_20s1450251g001 RRM 73 142
PDK_20s1450251g001 RRM 280 335

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PDK_20s1383761g001 Phoenix dactylifera PDK_20s1383761g001 N 0.898
POPTR_0009s13940 Populus trichocarpa POPTR_0009s13940 N 0.861
B9H1K1_POPTR Populus trichocarpa POPTR_0004s18320 N 0.848
LOC_Os10g30370 Oryza sativa LOC_Os10g30370 N 0.843
estExt_fgenesh1_pg.C_2070055 Physcomitrella patens estExt_fgenesh1_pg.C_2070055 N 0.837
estExt_gwp_gw1.C_3320014 Physcomitrella patens estExt_gwp_gw1.C_3320014 N 0.837
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.789
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.783
30183.m001297 Ricinus communis 30183.m001297 N 0.762
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.741
SB01G046740 Sorghum bicolor Sb01g046740 N 0.726
AC233901.1_FG001 Zea mays AC233901.1_FG001 N 0.721
PK01525.1 Cannabis sativa PK01525.1 N 0.720
GRMZM2G071589 Zea mays GRMZM2G071589 N 0.716
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.716
GRMZM2G076597 Zea mays GRMZM2G076597 N 0.711
SB01G021020 Sorghum bicolor Sb01g021020 N 0.711
ppa003064m Prunus persica ppa003064m N 0.704
BRADI3G27480 Brachypodium distachyon BRADI3G27480 N 0.701