SNAPOd2T00026674001 (Oikopleura dioica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SNAPOd2T00026674001 T48459_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00026674001 RRM 227 299

Links

Other RRM family RBPs
Other Oikopleura dioica RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.795
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.795
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.740
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.726
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.726
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.712
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.712
RBM42 Procavia capensis ENSPCAG00000013053 I 0.712
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.712
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.712
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.712
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.712
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.712
RBM42 Oryzias latipes ENSORLG00000003387 I 0.712
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.712
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.712
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.712
PHUM106890 Pediculus humanus PHUM106890 I 0.712
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.712
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.712
RBM42 Sus scrofa ENSSSCG00000002905 I 0.712
Rbm42 Mus musculus ENSMUSG00000036733 I 0.712
RBM42 Sorex araneus ENSSARG00000010724 I 0.712
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.712
RBM42 Canis familiaris ENSCAFG00000006925 I 0.712
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.712
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.712
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.712
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.712
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.712
XP_002167334.1 Hydra magnipapillata XP_002167334.1 I 0.712
LOC100051102 Equus caballus ENSECAG00000018215 I 0.712
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.712
RBM42 Microcebus murinus ENSMICG00000009880 I 0.712
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.712
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.712
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.712
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.712
RBM42 Homo sapiens ENSG00000126254 D 0.712
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.712
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.712