Aqu1.218430 (Amphimedon queenslandica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Aqu1.218430 T48989_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.732
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Aqu1.218430 RRM 160 230

Links

Other RRM family RBPs
Other Amphimedon queenslandica RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.761
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.761
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.761
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.746
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.732
RBM42 Oryzias latipes ENSORLG00000003387 I 0.732
RBM42 Procavia capensis ENSPCAG00000013053 I 0.732
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.732
Rbm42 Mus musculus ENSMUSG00000036733 I 0.732
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.732
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.732
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.732
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.732
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.732
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.732
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.732
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.732
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.732
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.732
RBM42 Sus scrofa ENSSSCG00000002905 I 0.732
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.732
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.732
RBM42 Sorex araneus ENSSARG00000010724 I 0.732
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.732
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.732
RBM42 Microcebus murinus ENSMICG00000009880 I 0.732
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.732
RBM42 Canis familiaris ENSCAFG00000006925 I 0.732
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.732
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.732
LOC100051102 Equus caballus ENSECAG00000018215 I 0.732
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.732
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.732
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.732
RBM42 Homo sapiens ENSG00000126254 D 0.732
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.732
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.718
PHUM106890 Pediculus humanus PHUM106890 I 0.718
A2VDB3 Xenopus laevis A2VDB3 I 0.718
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.718
rbm42 Danio rerio ENSDARG00000039910 I 0.718
AAI29698 Xenopus laevis AAI29698 I 0.718
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.704
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.704
AAI29577 Xenopus laevis AAI29577 I 0.704