LOC_Os01g42820 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os01g42820 T44927_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g42820.1 RRM 78 147
LOC_Os01g42820.1 RRM 179 248
LOC_Os01g42820.2 RRM 78 147
LOC_Os01g42820.2 RRM 179 248
LOC_Os01g42820.3 RRM 78 147
LOC_Os01g42820.3 RRM 179 248

Links

Other RRM family RBPs
Other Oryza sativa RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB03G027820 Sorghum bicolor Sb03g027820 N 0.964
GRMZM2G049866 Zea mays GRMZM2G049866 N 0.957
GRMZM2G117715 Zea mays GRMZM2G117715 N 0.950
BRADI2G43460 Brachypodium distachyon BRADI2G43460 N 0.936
PK28408.1 Cannabis sativa PK28408.1 N 0.779
MDP0000596919 Malus x domestica MDP0000596919 N 0.764
ppa005857m Prunus persica ppa005857m N 0.757
MDP0000250519 Malus x domestica MDP0000250519 N 0.757
Glyma06g33940.1 Glycine max Glyma06g33940.1 N 0.736
mgf018937m Mimulus guttatus mgf018937m N 0.732
MDP0000575061 Malus x domestica MDP0000575061 N 0.721
B9GGV7_POPTR Populus trichocarpa POPTR_0001s38640 N 0.721
PK03611.1 Cannabis sativa PK03611.1 N 0.721
MDP0000410930 Malus x domestica MDP0000410930 N 0.721
Cucsa.273510 Cucumis sativus Cucsa.273510 N 0.721
AT3G15010 Arabidopsis thaliana AT3G15010-TAIR-G N 0.721
mgf005844m Mimulus guttatus mgf005844m N 0.718
mgf011517m Mimulus guttatus mgf011517m N 0.718
chr3.CM0282.340.nc Lotus japonicus chr3.CM0282.340.nc N 0.714
Glyma12g19050.1 Glycine max Glyma12g19050.1 N 0.714
XM_002882862.1 Arabidopsis lyrata fgenesh2_kg.3__1628__AT3G15010.2 N 0.707
MDP0000709988 Malus x domestica MDP0000709988 N 0.707
LjT18N19.10.nd Lotus japonicus LjT18N19.10.nd N 0.707
Glyma07g32660.1 Glycine max Glyma07g32660.1 N 0.700