CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os01g42820
(
Oryza sativa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
LOC_Os01g42820
T44927_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os01g42820.1
RRM
78
147
LFVRGLGWETNSDSLRAIFSAFGDLEEAVVITDKSTGRSKGYGFVTFRHADSAVLALKEPSKKIDGRMTV
LOC_Os01g42820.1
RRM
179
248
IFVGNVPADMPSERLLAHFAAYGEIEEGPLGFDKQTGKFRGFALFVYKTPEGAQASLVDSVKVIDGHQLV
LOC_Os01g42820.2
RRM
78
147
LFVRGLGWETNSDSLRAIFSAFGDLEEAVVITDKSTGRSKGYGFVTFRHADSAVLALKEPSKKIDGRMTV
LOC_Os01g42820.2
RRM
179
248
IFVGNVPADMPSERLLAHFAAYGEIEEGPLGFDKQTGKFRGFALFVYKTPEGAQASLVDSVKVIDGHQLV
LOC_Os01g42820.3
RRM
78
147
LFVRGLGWETNSDSLRAIFSAFGDLEEAVVITDKSTGRSKGYGFVTFRHADSAVLALKEPSKKIDGRMTV
LOC_Os01g42820.3
RRM
179
248
IFVGNVPADMPSERLLAHFAAYGEIEEGPLGFDKQTGKFRGFALFVYKTPEGAQASLVDSVKVIDGHQLV
Links
Other
RRM
family RBPs
Other
Oryza sativa
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB03G027820
Sorghum bicolor
Sb03g027820
N
0.964
GRMZM2G049866
Zea mays
GRMZM2G049866
N
0.957
GRMZM2G117715
Zea mays
GRMZM2G117715
N
0.950
BRADI2G43460
Brachypodium distachyon
BRADI2G43460
N
0.936
PK28408.1
Cannabis sativa
PK28408.1
N
0.779
MDP0000596919
Malus x domestica
MDP0000596919
N
0.764
ppa005857m
Prunus persica
ppa005857m
N
0.757
MDP0000250519
Malus x domestica
MDP0000250519
N
0.757
Glyma06g33940.1
Glycine max
Glyma06g33940.1
N
0.736
mgf018937m
Mimulus guttatus
mgf018937m
N
0.732
MDP0000575061
Malus x domestica
MDP0000575061
N
0.721
B9GGV7_POPTR
Populus trichocarpa
POPTR_0001s38640
N
0.721
PK03611.1
Cannabis sativa
PK03611.1
N
0.721
MDP0000410930
Malus x domestica
MDP0000410930
N
0.721
Cucsa.273510
Cucumis sativus
Cucsa.273510
N
0.721
AT3G15010
Arabidopsis thaliana
AT3G15010-TAIR-G
N
0.721
mgf005844m
Mimulus guttatus
mgf005844m
N
0.718
mgf011517m
Mimulus guttatus
mgf011517m
N
0.718
chr3.CM0282.340.nc
Lotus japonicus
chr3.CM0282.340.nc
N
0.714
Glyma12g19050.1
Glycine max
Glyma12g19050.1
N
0.714
XM_002882862.1
Arabidopsis lyrata
fgenesh2_kg.3__1628__AT3G15010.2
N
0.707
MDP0000709988
Malus x domestica
MDP0000709988
N
0.707
LjT18N19.10.nd
Lotus japonicus
LjT18N19.10.nd
N
0.707
Glyma07g32660.1
Glycine max
Glyma07g32660.1
N
0.700