CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ppa-tag-262
(
Pristionchus pacificus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PPA14507
T45787_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.704
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPA14507
RRM
197
267
VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRDGKSNKSKGYGFVSFKSQEDYIRAMREMDGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Pristionchus pacificus
RBPs
58 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA09414
Caenorhabditis japonica
CJA09414
I
0.901
CRE29329
Caenorhabditis remanei
CRE29329
I
0.887
CBG21313
Caenorhabditis briggsae
CBG21313
I
0.887
tag-262
Caenorhabditis elegans
Y54H5A.3
I
0.887
CBN12017
Caenorhabditis brenneri
CBN12017
I
0.887
Minc13155
Meloidogyne incognita
Minc13155
I
0.859
LOAG_04208
Loa loa
LOAG_04208
I
0.845
WUBG_05387
Wuchereria bancrofti
WUBG_05387
I
0.845
Bm1_40380
Brugia malayi
Bm1_40380
I
0.845
e_gw1.16.225.1
Lottia gigantea
e_gw1.16.225.1
I
0.789
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.732
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.732
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.732
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.732
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.732
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.732
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.732
rbm42
Danio rerio
ENSDARG00000039910
I
0.718
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.718
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.718
AGAP010200
Anopheles gambiae
AGAP010200
I
0.718
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.718
e_gw.92.129.1
Nematostella vectensis
e_gw.92.129.1
I
0.718
PTSG_04228
Salpingoeca rosetta
PTSG_04228
I
0.718
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.704
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.704
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.704
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.704
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.704
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.704
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.704
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.704
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.704
RBM42
Sorex araneus
ENSSARG00000010724
I
0.704
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.704
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.704
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.704
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.704
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.704
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.704
XP_002167334.1
Hydra magnipapillata
XP_002167334.1
I
0.704
AAEL010642
Aedes aegypti
AAEL010642
I
0.704
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.704
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.704
gw1.1.892.1
Trichoplax adhaerens
gw1.1.892.1
N
0.704
estExt_fgenesh2_pg.C_90157
Monosiga brevicollis
estExt_fgenesh2_pg.C_90157
N
0.704
estExt_Genewise1Plus.C_1180017
Capitella teleta
estExt_Genewise1Plus.C_1180017
I
0.704
GP3.076550
Batrachochytrium dendrobatidis
GP3.076550
I
0.704
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.704
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.704
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.704
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.704
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.704
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.704
RBM42
Homo sapiens
ENSG00000126254
D
0.704
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.704
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.704
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.704