CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA09414
(
Caenorhabditis japonica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CJA09414
T34130_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.718
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.718
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA09414
RRM
196
266
VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRSNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Caenorhabditis japonica
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
tag-262
Caenorhabditis elegans
Y54H5A.3
I
0.986
CBG21313
Caenorhabditis briggsae
CBG21313
I
0.986
CBN12017
Caenorhabditis brenneri
CBN12017
I
0.986
CRE29329
Caenorhabditis remanei
CRE29329
I
0.986
Ppa-tag-262
Pristionchus pacificus
PPA14507
I
0.901
Bm1_40380
Brugia malayi
Bm1_40380
I
0.859
LOAG_04208
Loa loa
LOAG_04208
I
0.859
WUBG_05387
Wuchereria bancrofti
WUBG_05387
I
0.859
Minc13155
Meloidogyne incognita
Minc13155
I
0.831
e_gw1.16.225.1
Lottia gigantea
e_gw1.16.225.1
I
0.789
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.746
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.746
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.746
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.746
estExt_Genewise1Plus.C_1180017
Capitella teleta
estExt_Genewise1Plus.C_1180017
I
0.746
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.746
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.746
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.746
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.732
rbm42
Danio rerio
ENSDARG00000039910
I
0.732
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.718
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.718
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.718
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.718
RBM42
Sorex araneus
ENSSARG00000010724
I
0.718
gw1.1.892.1
Trichoplax adhaerens
gw1.1.892.1
N
0.718
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.718
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.718
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.718
RBM42
Homo sapiens
ENSG00000126254
D
0.718
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.718
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.718
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.718
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.718
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.718
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.718
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.718
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.718
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.718
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.718
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.718
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.718
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.718
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.718
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.718
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.718
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.718
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.718
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.718
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.718
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.718
AGAP010200
Anopheles gambiae
AGAP010200
I
0.704
GP3.076550
Batrachochytrium dendrobatidis
GP3.076550
I
0.704
A2VDB3
Xenopus laevis
A2VDB3
I
0.704
AAI29698
Xenopus laevis
AAI29698
I
0.704
PTSG_04228
Salpingoeca rosetta
PTSG_04228
I
0.704