LOC_Os11g01020 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os11g01020 T45147_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os11g01020.1 RRM 70 139
LOC_Os11g01020.2 RRM 70 139

Links

Other RRM family RBPs
Other Oryza sativa RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 1.000
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 1.000
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.971
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.900
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.900
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.900
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.900
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.886
29876.m000260 Ricinus communis 29876.m000260 N 0.886
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.871
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.871
mgf010207m Mimulus guttatus mgf010207m N 0.871
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.857
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.857
ppa010358m Prunus persica ppa010358m N 0.857
SB01G039330 Sorghum bicolor Sb01g039330 N 0.857
MDP0000119945 Malus x domestica MDP0000119945 N 0.843
MDP0000153894 Malus x domestica MDP0000153894 N 0.843
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.843
MDP0000251188 Malus x domestica MDP0000251188 N 0.843
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.843
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.829
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.829
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.829
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.829
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.829
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.814
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.814
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.800
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.800
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.800
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.800
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.786
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.786
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.786
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.771
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.771
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.771
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.757
GRMZM2G019251 Zea mays GRMZM2G019251 N 0.757
SB02G007020 Sorghum bicolor Sb02g007020 N 0.757
MDP0000320467 Malus x domestica MDP0000320467 N 0.743
SB07G020860 Sorghum bicolor Sb07g020860 N 0.743
GRMZM2G140352 Zea mays GRMZM2G140352 N 0.743
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.743
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.729
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.729
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.729
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.729
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.729
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.714
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.714
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.714
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.714
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.714
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.714
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.714
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.700
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.700
29585.m000588 Ricinus communis 29585.m000588 N 0.700
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.700
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.700
ppa014850m Prunus persica ppa014850m N 0.700
MDP0000299639 Malus x domestica MDP0000299639 N 0.700
PK16300.1 Cannabis sativa PK16300.1 N 0.700
PDK_20s130094197g001 Phoenix dactylifera PDK_20s130094197g001 N 0.700
MDP0000275263 Malus x domestica MDP0000275263 N 0.700