LOC_Os12g01010 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os12g01010 T45162_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os12g01010.1 RRM 74 143

Links

Other RRM family RBPs
Other Oryza sativa RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.971
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.971
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.971
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.929
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.929
29876.m000260 Ricinus communis 29876.m000260 N 0.914
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.914
mgf010207m Mimulus guttatus mgf010207m N 0.900
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.900
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.900
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.900
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.900
SB01G039330 Sorghum bicolor Sb01g039330 N 0.886
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.886
ppa010358m Prunus persica ppa010358m N 0.886
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.871
MDP0000119945 Malus x domestica MDP0000119945 N 0.871
MDP0000251188 Malus x domestica MDP0000251188 N 0.871
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.871
MDP0000153894 Malus x domestica MDP0000153894 N 0.871
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.857
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.857
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.857
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.857
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.857
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.843
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.843
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.829
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.829
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.829
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.829
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.814
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.814
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.814
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.800
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.800
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.800
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.786
MDP0000320467 Malus x domestica MDP0000320467 N 0.771
SB07G020860 Sorghum bicolor Sb07g020860 N 0.757
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.757
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.757
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.743
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.743
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.743
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.729
ppa014850m Prunus persica ppa014850m N 0.729
SB02G007020 Sorghum bicolor Sb02g007020 N 0.729
GRMZM2G019251 Zea mays GRMZM2G019251 N 0.729
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.729
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.729
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.729
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.714
GRMZM2G140352 Zea mays GRMZM2G140352 N 0.714
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.714
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.714
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.714
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.714
PDK_20s130094197g001 Phoenix dactylifera PDK_20s130094197g001 N 0.714
mgf013964m Mimulus guttatus mgf013964m N 0.700
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.700
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.700
29585.m000588 Ricinus communis 29585.m000588 N 0.700
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.700
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.700
mgf000319m Mimulus guttatus mgf000319m N 0.700
PDK_20s1328531g001 Phoenix dactylifera PDK_20s1328531g001 N 0.700
MDP0000299639 Malus x domestica MDP0000299639 N 0.700
MDP0000275263 Malus x domestica MDP0000275263 N 0.700
PK16300.1 Cannabis sativa PK16300.1 N 0.700