CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH97658
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH97658
T59592_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH97658
RRM
53
120
VFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDRTGVSKGYGFISFSDEVDIQKIVKSQISFHGKKLK
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q4V7Y4
Xenopus laevis
Q4V7Y4
N
1.000
AAH71023
Xenopus laevis
AAH71023
N
1.000
AAI70359
Xenopus laevis
AAI70359
N
0.985
AAC41242
Xenopus laevis
AAC41242
N
0.985
O57437
Xenopus laevis
O57437
N
0.985
AAI70361
Xenopus laevis
AAI70361
N
0.985
DAZL
Procavia capensis
ENSPCAG00000016182
N
0.809
DAZL
Pteropus vampyrus
ENSPVAG00000007836
N
0.809
ENSOGAG00000006983
Otolemur garnettii
ENSOGAG00000006983
N
0.794
ENSOCUG00000012635
Oryctolagus cuniculus
ENSOCUG00000012635
N
0.794
ENSPPYG00000014080
Pongo pygmaeus
ENSPPYG00000014080
N
0.794
XM_001380213.1
Monodelphis domestica
ENSMODG00000014730
N
0.794
ENSSARG00000008473
Sorex araneus
ENSSARG00000008473
N
0.794
ENSTSYG00000000788
Tarsius syrichta
ENSTSYG00000000788
N
0.794
Ame_R003159
Ailuropoda melanoleuca
Ame_R003159
N
0.794
ENSTBEG00000012225
Tupaia belangeri
ENSTBEG00000012225
N
0.794
O77586_MACMU
Macaca mulatta
ENSMMUG00000011361
N
0.794
Dazl
Rattus norvegicus
ENSRNOG00000023474
N
0.794
O77584_PANTR
Pan troglodytes
ENSPTRG00000014674
N
0.794
Dazl
Mus musculus
ENSMUSG00000010592
N
0.794
ENSCPOG00000007628
Cavia porcellus
ENSCPOG00000007628
N
0.794
DAZL
Homo sapiens
ENSG00000092345
N
0.794
ENSEEUG00000005973
Erinaceus europaeus
ENSEEUG00000005973
N
0.794
A3DUJ0_BOVIN
Bos taurus
ENSBTAG00000000502
N
0.794
ENSCAFG00000005867
Canis familiaris
ENSCAFG00000005867
N
0.794
DAZL
Gorilla gorilla
ENSGGOG00000023632
N
0.794
DAZL
Loxodonta africana
ENSLAFG00000009132
N
0.794
ENSVPAG00000000468
Vicugna pacos
ENSVPAG00000000468
N
0.779
LOC100063430
Equus caballus
ENSECAG00000010923
N
0.779
dazl
Xenopus tropicalis
ENSXETG00000025199
N
0.779
Dazl
Dipodomys ordii
ENSDORG00000011497
N
0.779
DAZL_CHICK
Gallus gallus
ENSGALG00000011243
N
0.765
ENSMGAG00000010878
Meleagris gallopavo
ENSMGAG00000010878
N
0.765
DAZ1
Homo sapiens
ENSG00000188120
N
0.750
DAZ2
Homo sapiens
ENSG00000205944
N
0.750
DAZ3
Homo sapiens
ENSG00000187191
N
0.750
DAZ4
Homo sapiens
ENSG00000205916
N
0.750
Q9TV38_PANTR
Pan troglodytes
ENSPTRG00000033761
N
0.735
Q56GW9_PANTR
Pan troglodytes
ENSPTRG00000022519
N
0.735
Q9TV38_PANTR
Pan troglodytes
ENSPTRG00000022523
N
0.735
Q56GW9_PANTR
Pan troglodytes
ENSPTRG00000023120
N
0.735
Q56GW9_PANTR
Pan troglodytes
ENSPTRG00000028811
N
0.735
DAZL
Taeniopygia guttata
ENSTGUG00000003145
N
0.706