CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSTSYG00000000788
(
Tarsius syrichta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTSYG00000000788
T42400_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000000727
RRM
41
108
IFVGGIDIRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLK
Links
Other
RRM
family RBPs
Other
Tarsius syrichta
RBPs
47 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCPOG00000007628
Cavia porcellus
ENSCPOG00000007628
N
0.985
ENSVPAG00000000468
Vicugna pacos
ENSVPAG00000000468
N
0.985
DAZL
Pteropus vampyrus
ENSPVAG00000007836
N
0.985
LOC100063430
Equus caballus
ENSECAG00000010923
N
0.985
XM_001380213.1
Monodelphis domestica
ENSMODG00000014730
N
0.971
ENSTBEG00000012225
Tupaia belangeri
ENSTBEG00000012225
N
0.971
Ame_R003159
Ailuropoda melanoleuca
Ame_R003159
N
0.971
DAZL
Procavia capensis
ENSPCAG00000016182
N
0.971
Dazl
Rattus norvegicus
ENSRNOG00000023474
N
0.971
A3DUJ0_BOVIN
Bos taurus
ENSBTAG00000000502
N
0.971
ENSCAFG00000005867
Canis familiaris
ENSCAFG00000005867
N
0.971
Dazl
Mus musculus
ENSMUSG00000010592
N
0.971
ENSOGAG00000006983
Otolemur garnettii
ENSOGAG00000006983
N
0.971
ENSOCUG00000012635
Oryctolagus cuniculus
ENSOCUG00000012635
N
0.971
ENSSARG00000008473
Sorex araneus
ENSSARG00000008473
N
0.971
DAZL
Gorilla gorilla
ENSGGOG00000023632
N
0.956
DAZL
Loxodonta africana
ENSLAFG00000009132
N
0.956
O77584_PANTR
Pan troglodytes
ENSPTRG00000014674
N
0.956
ENSPPYG00000014080
Pongo pygmaeus
ENSPPYG00000014080
N
0.956
O77586_MACMU
Macaca mulatta
ENSMMUG00000011361
N
0.956
DAZL
Homo sapiens
ENSG00000092345
N
0.956
ENSEEUG00000005973
Erinaceus europaeus
ENSEEUG00000005973
N
0.956
Dazl
Dipodomys ordii
ENSDORG00000011497
N
0.956
DAZ4
Homo sapiens
ENSG00000205916
N
0.868
DAZ1
Homo sapiens
ENSG00000188120
N
0.868
DAZ2
Homo sapiens
ENSG00000205944
N
0.868
DAZ3
Homo sapiens
ENSG00000187191
N
0.868
Q56GW9_PANTR
Pan troglodytes
ENSPTRG00000028811
N
0.853
Q9TV38_PANTR
Pan troglodytes
ENSPTRG00000033761
N
0.853
Q56GW9_PANTR
Pan troglodytes
ENSPTRG00000023120
N
0.853
Q56GW9_PANTR
Pan troglodytes
ENSPTRG00000022519
N
0.853
Q9TV38_PANTR
Pan troglodytes
ENSPTRG00000022523
N
0.853
DAZL
Choloepus hoffmanni
ENSCHOG00000005264
N
0.853
ENSMEUG00000007283
Macropus eugenii
ENSMEUG00000007283
N
0.824
DAZL_CHICK
Gallus gallus
ENSGALG00000011243
N
0.809
AAI70359
Xenopus laevis
AAI70359
N
0.809
AAC41242
Xenopus laevis
AAC41242
N
0.809
O57437
Xenopus laevis
O57437
N
0.809
AAI70361
Xenopus laevis
AAI70361
N
0.809
ENSMGAG00000010878
Meleagris gallopavo
ENSMGAG00000010878
N
0.809
AAH71023
Xenopus laevis
AAH71023
N
0.794
Q4V7Y4
Xenopus laevis
Q4V7Y4
N
0.794
AAH97658
Xenopus laevis
AAH97658
N
0.794
DAZL
Taeniopygia guttata
ENSTGUG00000003145
N
0.779
dazl
Xenopus tropicalis
ENSXETG00000025199
N
0.779
ENSCJAG00000003593
Callithrix jacchus
ENSCJAG00000003593
N
0.757
ENSOANG00000006742
Ornithorhynchus anatinus
ENSOANG00000006742
N
0.740