CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAI70359
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAI70359
T59652_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI70359
RRM
35
102
VFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDRTGVSKGYGFISFSDEVDVQKIVKSQISFHGKKLK
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI70361
Xenopus laevis
AAI70361
N
1.000
AAC41242
Xenopus laevis
AAC41242
N
1.000
O57437
Xenopus laevis
O57437
N
1.000
Q4V7Y4
Xenopus laevis
Q4V7Y4
N
0.985
AAH71023
Xenopus laevis
AAH71023
N
0.985
AAH97658
Xenopus laevis
AAH97658
N
0.985
DAZL
Procavia capensis
ENSPCAG00000016182
N
0.824
DAZL
Pteropus vampyrus
ENSPVAG00000007836
N
0.824
ENSOGAG00000006983
Otolemur garnettii
ENSOGAG00000006983
N
0.809
XM_001380213.1
Monodelphis domestica
ENSMODG00000014730
N
0.809
ENSPPYG00000014080
Pongo pygmaeus
ENSPPYG00000014080
N
0.809
ENSOCUG00000012635
Oryctolagus cuniculus
ENSOCUG00000012635
N
0.809
ENSSARG00000008473
Sorex araneus
ENSSARG00000008473
N
0.809
ENSTSYG00000000788
Tarsius syrichta
ENSTSYG00000000788
N
0.809
Ame_R003159
Ailuropoda melanoleuca
Ame_R003159
N
0.809
ENSTBEG00000012225
Tupaia belangeri
ENSTBEG00000012225
N
0.809
O77586_MACMU
Macaca mulatta
ENSMMUG00000011361
N
0.809
Dazl
Rattus norvegicus
ENSRNOG00000023474
N
0.809
O77584_PANTR
Pan troglodytes
ENSPTRG00000014674
N
0.809
Dazl
Mus musculus
ENSMUSG00000010592
N
0.809
ENSCPOG00000007628
Cavia porcellus
ENSCPOG00000007628
N
0.809
DAZL
Homo sapiens
ENSG00000092345
N
0.809
ENSEEUG00000005973
Erinaceus europaeus
ENSEEUG00000005973
N
0.809
A3DUJ0_BOVIN
Bos taurus
ENSBTAG00000000502
N
0.809
ENSCAFG00000005867
Canis familiaris
ENSCAFG00000005867
N
0.809
DAZL
Gorilla gorilla
ENSGGOG00000023632
N
0.809
DAZL
Loxodonta africana
ENSLAFG00000009132
N
0.809
ENSVPAG00000000468
Vicugna pacos
ENSVPAG00000000468
N
0.794
LOC100063430
Equus caballus
ENSECAG00000010923
N
0.794
dazl
Xenopus tropicalis
ENSXETG00000025199
N
0.794
Dazl
Dipodomys ordii
ENSDORG00000011497
N
0.794
DAZL_CHICK
Gallus gallus
ENSGALG00000011243
N
0.779
ENSMGAG00000010878
Meleagris gallopavo
ENSMGAG00000010878
N
0.779
DAZ1
Homo sapiens
ENSG00000188120
N
0.765
DAZ2
Homo sapiens
ENSG00000205944
N
0.765
DAZ3
Homo sapiens
ENSG00000187191
N
0.765
DAZ4
Homo sapiens
ENSG00000205916
N
0.765
Q9TV38_PANTR
Pan troglodytes
ENSPTRG00000033761
N
0.750
Q56GW9_PANTR
Pan troglodytes
ENSPTRG00000022519
N
0.750
Q9TV38_PANTR
Pan troglodytes
ENSPTRG00000022523
N
0.750
Q56GW9_PANTR
Pan troglodytes
ENSPTRG00000023120
N
0.750
Q56GW9_PANTR
Pan troglodytes
ENSPTRG00000028811
N
0.750
DAZL
Taeniopygia guttata
ENSTGUG00000003145
N
0.721
DAZL
Choloepus hoffmanni
ENSCHOG00000005264
N
0.706