CBN18093 (Caenorhabditis brenneri)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 CBN18093 T60223_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
CBN18093 S1 78 161

Links

Other S1 family RBPs
Other Caenorhabditis brenneri RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBG04195 Caenorhabditis briggsae CBG04195 N 0.988
CJA18930 Caenorhabditis japonica CJA18930 N 0.988
rpb-7 Caenorhabditis elegans Y54E10BR.6 N 0.976
CRE30052 Caenorhabditis remanei CRE30052 N 0.976
LOAG_03448 Loa loa LOAG_03448 N 0.845
Bm1_48540 Brugia malayi Bm1_48540 N 0.798
XP_001175728.1 Strongylocentrotus purpuratus XP_001175728.1 N 0.786
XP_001176876.1 Strongylocentrotus purpuratus XP_001176876.1 N 0.786
XP_001175504.1 Strongylocentrotus purpuratus XP_001175504.1 N 0.786
XP_780458.1 Strongylocentrotus purpuratus XP_780458.1 N 0.786
Minc17095 Meloidogyne incognita Minc17095 N 0.774
ENSCSAVG00000002667 Ciona savignyi ENSCSAVG00000002667 N 0.774
Polr2g Rattus norvegicus ENSRNOG00000019439 N 0.750
POLR2G Pan troglodytes ENSPTRG00000003786 N 0.750
AAI28969 Xenopus laevis AAI28969 N 0.750
POLR2G Oryzias latipes ENSORLG00000003154 N 0.750
POLR2G Procavia capensis ENSPCAG00000016408 N 0.750
POLR2G Takifugu rubripes ENSTRUG00000002492 N 0.750
polr2g Xenopus tropicalis ENSXETG00000006022 N 0.750
XP_002157143.1 Hydra magnipapillata XP_002157143.1 N 0.750
POLR2G Oryctolagus cuniculus ENSOCUG00000009485 N 0.750
Ame_R013924 Ailuropoda melanoleuca Ame_R013924 N 0.750
PASA_GEN_8000031 Daphnia pulex PASA_GEN_8000031 N 0.750
POLR2G Tursiops truncatus ENSTTRG00000002478 N 0.750
ENSPPYG00000003147 Pongo pygmaeus ENSPPYG00000003147 N 0.750
polr2gl Danio rerio ENSDARG00000056127 N 0.750
POLR2G Cavia porcellus ENSCPOG00000001153 N 0.750
POLR2G Anolis carolinensis ENSACAG00000001005 N 0.750
POLR2G Loxodonta africana ENSLAFG00000004354 N 0.750
POLR2G Ornithorhynchus anatinus ENSOANG00000005808 N 0.750
Polr2g Dipodomys ordii ENSDORG00000015696 N 0.750
POLR2G Gasterosteus aculeatus ENSGACG00000017706 N 0.750
POLR2G Gorilla gorilla ENSGGOG00000011739 N 0.750
LOC100063883 Equus caballus ENSECAG00000021465 N 0.750
LOC100398629 Callithrix jacchus ENSCJAG00000018688 N 0.750
POLR2G Macropus eugenii ENSMEUG00000011547 N 0.750
POLR2G Macaca mulatta ENSMMUG00000014368 N 0.750
POLR2G Monodelphis domestica ENSMODG00000007984 N 0.750
Polr2g Mus musculus ENSMUSG00000071662 N 0.750
RPB7_BOVIN Bos taurus ENSBTAG00000009483 N 0.750
ENSMLUG00000011039 Myotis lucifugus ENSMLUG00000011039 N 0.750
ENSCING00000004991 Ciona intestinalis ENSCING00000004991 N 0.750
POLR2G Canis familiaris ENSCAFG00000015461 N 0.750
ENSMLUG00000003971 Myotis lucifugus ENSMLUG00000003971 N 0.750
POLR2G Homo sapiens ENSG00000168002 N 0.750
estExt_fgenesh2_pg.C_1620033 Branchiostoma floridae estExt_fgenesh2_pg.C_1620033 N 0.738
estExt_gwp.C_3050025 Branchiostoma floridae estExt_gwp.C_3050025 N 0.738
POLR2G Microcebus murinus ENSMICG00000009967 N 0.738
POLR2G Pteropus vampyrus ENSPVAG00000003481 N 0.738
estExt_Genewise1Plus.C_sca_120103 Lottia gigantea estExt_Genewise1Plus.C_sca_120103 N 0.738
Ppa-rpb-7 Pristionchus pacificus PPA05219 N 0.729
estExt_fgenesh1_pg.C_1060040 Nematostella vectensis estExt_fgenesh1_pg.C_1060040 N 0.726
POLR2G Vicugna pacos ENSVPAG00000009534 N 0.714
WUBG_12956 Wuchereria bancrofti WUBG_12956 N 0.702
estExt_Genewise1Plus.C_2200037 Capitella teleta estExt_Genewise1Plus.C_2200037 N 0.702
SNAPOd2T00009931001 Oikopleura dioica SNAPOd2T00009931001 N 0.702