estExt_fgenesh1_pg.C_1060040 (Nematostella vectensis)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 estExt_fgenesh1_pg.C_1060040 T61075_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_1060040 S1 78 161

Links

Other S1 family RBPs
Other Nematostella vectensis RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1Plus.C_sca_120103 Lottia gigantea estExt_Genewise1Plus.C_sca_120103 N 0.869
XP_002157143.1 Hydra magnipapillata XP_002157143.1 N 0.869
polr2g Xenopus tropicalis ENSXETG00000006022 N 0.857
AAI28969 Xenopus laevis AAI28969 N 0.857
estExt_fgenesh2_pg.C_1620033 Branchiostoma floridae estExt_fgenesh2_pg.C_1620033 N 0.857
POLR2G Anolis carolinensis ENSACAG00000001005 N 0.857
XP_001176876.1 Strongylocentrotus purpuratus XP_001176876.1 N 0.857
XP_780458.1 Strongylocentrotus purpuratus XP_780458.1 N 0.857
XP_001175728.1 Strongylocentrotus purpuratus XP_001175728.1 N 0.857
XP_001175504.1 Strongylocentrotus purpuratus XP_001175504.1 N 0.857
polr2gl Danio rerio ENSDARG00000056127 N 0.857
estExt_gwp.C_3050025 Branchiostoma floridae estExt_gwp.C_3050025 N 0.857
ENSMLUG00000003971 Myotis lucifugus ENSMLUG00000003971 N 0.845
ENSMLUG00000011039 Myotis lucifugus ENSMLUG00000011039 N 0.845
POLR2G Macropus eugenii ENSMEUG00000011547 N 0.845
POLR2G Gasterosteus aculeatus ENSGACG00000017706 N 0.845
POLR2G Macaca mulatta ENSMMUG00000014368 N 0.845
LOC100063883 Equus caballus ENSECAG00000021465 N 0.845
POLR2G Homo sapiens ENSG00000168002 N 0.845
POLR2G Loxodonta africana ENSLAFG00000004354 N 0.845
POLR2G Procavia capensis ENSPCAG00000016408 N 0.845
POLR2G Pan troglodytes ENSPTRG00000003786 N 0.845
Polr2g Rattus norvegicus ENSRNOG00000019439 N 0.845
POLR2G Takifugu rubripes ENSTRUG00000002492 N 0.845
POLR2G Tursiops truncatus ENSTTRG00000002478 N 0.845
ENSPPYG00000003147 Pongo pygmaeus ENSPPYG00000003147 N 0.845
Polr2g Dipodomys ordii ENSDORG00000015696 N 0.845
Polr2g Mus musculus ENSMUSG00000071662 N 0.845
POLR2G Ornithorhynchus anatinus ENSOANG00000005808 N 0.845
POLR2G Oryctolagus cuniculus ENSOCUG00000009485 N 0.845
POLR2G Oryzias latipes ENSORLG00000003154 N 0.845
POLR2G Monodelphis domestica ENSMODG00000007984 N 0.845
POLR2G Gorilla gorilla ENSGGOG00000011739 N 0.845
POLR2G Canis familiaris ENSCAFG00000015461 N 0.845
RPB7_BOVIN Bos taurus ENSBTAG00000009483 N 0.845
ENSCING00000004991 Ciona intestinalis ENSCING00000004991 N 0.845
Ame_R013924 Ailuropoda melanoleuca Ame_R013924 N 0.845
LOC100398629 Callithrix jacchus ENSCJAG00000018688 N 0.845
POLR2G Cavia porcellus ENSCPOG00000001153 N 0.845
PASA_GEN_8000031 Daphnia pulex PASA_GEN_8000031 N 0.833
POLR2G Pteropus vampyrus ENSPVAG00000003481 N 0.833
POLR2G Microcebus murinus ENSMICG00000009967 N 0.821
estExt_Genewise1Plus.C_2200037 Capitella teleta estExt_Genewise1Plus.C_2200037 N 0.821
POLR2G Vicugna pacos ENSVPAG00000009534 N 0.810
ENSCSAVG00000002667 Ciona savignyi ENSCSAVG00000002667 N 0.786
LOAG_03448 Loa loa LOAG_03448 N 0.786
PHUM079870 Pediculus humanus PHUM079870 N 0.774
amel4_ncbi_hmm13760 Apis mellifera amel4_ncbi_hmm13760 N 0.750
amel4_ncbi_hmm13760 Tribolium castaneum amel4_ncbi_hmm13760 N 0.750
nasonia_NCBI_hmm304924 Nasonia vitripennis nasonia_NCBI_hmm304924 N 0.750
CPIJ001219 Culex quinquefasciatus CPIJ001219 N 0.738
rpb-7 Caenorhabditis elegans Y54E10BR.6 N 0.738
CBG04195 Caenorhabditis briggsae CBG04195 N 0.738
CJA18930 Caenorhabditis japonica CJA18930 N 0.738
Bm1_48540 Brugia malayi Bm1_48540 N 0.738
CpipJ_CPIJ001219 Culex pipiens CpipJ_CPIJ001219 N 0.738
CRE30052 Caenorhabditis remanei CRE30052 N 0.726
CBN18093 Caenorhabditis brenneri CBN18093 N 0.726
Aqu1.223919 Amphimedon queenslandica Aqu1.223919 N 0.726
SNAPOd2T00009931001 Oikopleura dioica SNAPOd2T00009931001 N 0.726
GJ23373 Drosophila virilis FBgn0210474 N 0.714
GK11212 Drosophila willistoni FBgn0213223 N 0.714
GA27654-RA Drosophila pseudoobscura FBgn0249019 N 0.714
GD20374 Drosophila simulans FBgn0191847 N 0.714
GE26402 Drosophila yakuba FBgn0243428 N 0.714
GA16051-RA Drosophila pseudoobscura FBgn0076067 N 0.714
GF11824 Drosophila ananassae FBgn0088864 N 0.714
Rpb7 Drosophila melanogaster FBgn0051155 N 0.714
AAEL003401 Aedes aegypti AAEL003401 N 0.714
GG20814 Drosophila erecta FBgn0113000 N 0.714
GH18755 Drosophila grimshawi FBgn0126222 N 0.714
GL12210 Drosophila persimilis FBgn0149817 N 0.714
GI22645 Drosophila mojavensis FBgn0145373 N 0.714
GM25797 Drosophila sechellia FBgn0180653 N 0.714