ENSCING00000004991 (Ciona intestinalis)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 ENSCING00000004991 T60288_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000010264 S1 78 161

Links

Other S1 family RBPs
Other Ciona intestinalis RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCSAVG00000002667 Ciona savignyi ENSCSAVG00000002667 N 0.940
POLR2G Anolis carolinensis ENSACAG00000001005 N 0.917
AAI28969 Xenopus laevis AAI28969 N 0.917
polr2g Xenopus tropicalis ENSXETG00000006022 N 0.917
polr2gl Danio rerio ENSDARG00000056127 N 0.917
POLR2G Takifugu rubripes ENSTRUG00000002492 N 0.905
POLR2G Tursiops truncatus ENSTTRG00000002478 N 0.905
Polr2g Rattus norvegicus ENSRNOG00000019439 N 0.905
POLR2G Pan troglodytes ENSPTRG00000003786 N 0.905
POLR2G Procavia capensis ENSPCAG00000016408 N 0.905
ENSPPYG00000003147 Pongo pygmaeus ENSPPYG00000003147 N 0.905
RPB7_BOVIN Bos taurus ENSBTAG00000009483 N 0.905
Polr2g Dipodomys ordii ENSDORG00000015696 N 0.905
XP_001176876.1 Strongylocentrotus purpuratus XP_001176876.1 N 0.905
XP_780458.1 Strongylocentrotus purpuratus XP_780458.1 N 0.905
XP_001175728.1 Strongylocentrotus purpuratus XP_001175728.1 N 0.905
XP_001175504.1 Strongylocentrotus purpuratus XP_001175504.1 N 0.905
LOC100398629 Callithrix jacchus ENSCJAG00000018688 N 0.905
Ame_R013924 Ailuropoda melanoleuca Ame_R013924 N 0.905
POLR2G Oryzias latipes ENSORLG00000003154 N 0.905
POLR2G Cavia porcellus ENSCPOG00000001153 N 0.905
LOC100063883 Equus caballus ENSECAG00000021465 N 0.905
POLR2G Canis familiaris ENSCAFG00000015461 N 0.905
ENSMLUG00000003971 Myotis lucifugus ENSMLUG00000003971 N 0.905
POLR2G Homo sapiens ENSG00000168002 N 0.905
POLR2G Gasterosteus aculeatus ENSGACG00000017706 N 0.905
POLR2G Macropus eugenii ENSMEUG00000011547 N 0.905
POLR2G Gorilla gorilla ENSGGOG00000011739 N 0.905
POLR2G Loxodonta africana ENSLAFG00000004354 N 0.905
ENSMLUG00000011039 Myotis lucifugus ENSMLUG00000011039 N 0.905
Polr2g Mus musculus ENSMUSG00000071662 N 0.905
POLR2G Oryctolagus cuniculus ENSOCUG00000009485 N 0.905
POLR2G Monodelphis domestica ENSMODG00000007984 N 0.905
POLR2G Macaca mulatta ENSMMUG00000014368 N 0.905
POLR2G Ornithorhynchus anatinus ENSOANG00000005808 N 0.905
estExt_fgenesh2_pg.C_1620033 Branchiostoma floridae estExt_fgenesh2_pg.C_1620033 N 0.893
estExt_gwp.C_3050025 Branchiostoma floridae estExt_gwp.C_3050025 N 0.893
POLR2G Pteropus vampyrus ENSPVAG00000003481 N 0.893
XP_002157143.1 Hydra magnipapillata XP_002157143.1 N 0.881
POLR2G Microcebus murinus ENSMICG00000009967 N 0.881
POLR2G Vicugna pacos ENSVPAG00000009534 N 0.869
estExt_Genewise1Plus.C_sca_120103 Lottia gigantea estExt_Genewise1Plus.C_sca_120103 N 0.869
PASA_GEN_8000031 Daphnia pulex PASA_GEN_8000031 N 0.869
estExt_fgenesh1_pg.C_1060040 Nematostella vectensis estExt_fgenesh1_pg.C_1060040 N 0.845
estExt_Genewise1Plus.C_2200037 Capitella teleta estExt_Genewise1Plus.C_2200037 N 0.821
PHUM079870 Pediculus humanus PHUM079870 N 0.798
SNAPOd2T00009931001 Oikopleura dioica SNAPOd2T00009931001 N 0.786
nasonia_NCBI_hmm304924 Nasonia vitripennis nasonia_NCBI_hmm304924 N 0.774
amel4_ncbi_hmm13760 Tribolium castaneum amel4_ncbi_hmm13760 N 0.774
amel4_ncbi_hmm13760 Apis mellifera amel4_ncbi_hmm13760 N 0.774
LOAG_03448 Loa loa LOAG_03448 N 0.774
CJA18930 Caenorhabditis japonica CJA18930 N 0.762
CPIJ001219 Culex quinquefasciatus CPIJ001219 N 0.762
CBG04195 Caenorhabditis briggsae CBG04195 N 0.762
CpipJ_CPIJ001219 Culex pipiens CpipJ_CPIJ001219 N 0.762
rpb-7 Caenorhabditis elegans Y54E10BR.6 N 0.762
CRE30052 Caenorhabditis remanei CRE30052 N 0.750
AAEL003401 Aedes aegypti AAEL003401 N 0.750
CBN18093 Caenorhabditis brenneri CBN18093 N 0.750
GM25797 Drosophila sechellia FBgn0180653 N 0.738
GG20814 Drosophila erecta FBgn0113000 N 0.738
GH18755 Drosophila grimshawi FBgn0126222 N 0.738
GF11824 Drosophila ananassae FBgn0088864 N 0.738
GA16051-RA Drosophila pseudoobscura FBgn0076067 N 0.738
Rpb7 Drosophila melanogaster FBgn0051155 N 0.738
GI22645 Drosophila mojavensis FBgn0145373 N 0.738
GL12210 Drosophila persimilis FBgn0149817 N 0.738
GA27654-RA Drosophila pseudoobscura FBgn0249019 N 0.738
GE26402 Drosophila yakuba FBgn0243428 N 0.738
GK11212 Drosophila willistoni FBgn0213223 N 0.738
GJ23373 Drosophila virilis FBgn0210474 N 0.738
GD20374 Drosophila simulans FBgn0191847 N 0.738
Bm1_48540 Brugia malayi Bm1_48540 N 0.726
Minc17095 Meloidogyne incognita Minc17095 N 0.726
POLR2G Ochotona princeps ENSOPRG00000014769 N 0.702