CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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zrsr2
(
Danio rerio
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSDARG00000058448
T00481_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000075762
CCCH ZF
161
187
KDKANCPFFLKTGACRFGDRCSRKHDH
ENSDARP00000075762
RRM
235
292
EDALPEFKNAGRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVMFNGRWYAGRQLQ
ENSDARP00000075762
CCCH ZF
301
326
WKTAICGLFDRRKCPKGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Danio rerio
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R018576
Ailuropoda melanoleuca
Ame_R018576
N
0.768
ENSACAG00000017034
Anolis carolinensis
ENSACAG00000017034
N
0.821
ENSBTAG00000020419
Bos taurus
ENSBTAG00000020419
N
0.768
XM_548872.2
Canis familiaris
ENSCAFG00000012201
N
0.768
ENSCJAG00000020956
Callithrix jacchus
ENSCJAG00000020956
N
0.768
ENSCPOG00000004227
Cavia porcellus
ENSCPOG00000004227
N
0.768
Zrsr1
Dipodomys ordii
ENSDORG00000001238
N
0.705
LOC100056195
Equus caballus
ENSECAG00000006454
N
0.768
ENSEEUG00000002115
Erinaceus europaeus
ENSEEUG00000002115
N
0.786
ENSETEG00000005141
Echinops telfairi
ENSETEG00000005141
N
0.723
ZRSR2
Homo sapiens
ENSG00000169249
N
0.777
ZRSR1
Homo sapiens
ENSG00000212643
N
0.777
ZRSR2
Gasterosteus aculeatus
ENSGACG00000015069
N
0.812
ZRSR2
Gallus gallus
ENSGALG00000016552
N
0.777
ENSGGOG00000011962
Gorilla gorilla
ENSGGOG00000011962
N
0.777
ENSLAFG00000009326
Loxodonta africana
ENSLAFG00000009326
N
0.750
ENSLAFG00000018654
Loxodonta africana
ENSLAFG00000018654
N
0.732
ENSMGAG00000014689
Meleagris gallopavo
ENSMGAG00000014689
N
0.777
ENSMICG00000003211
Microcebus murinus
ENSMICG00000003211
N
0.768
ENSMLUG00000009780
Myotis lucifugus
ENSMLUG00000009780
N
0.777
ZRSR2
Macaca mulatta
ENSMMUG00000014054
N
0.777
XM_001380899.1
Monodelphis domestica
ENSMODG00000017202
N
0.804
Zrsr2
Mus musculus
ENSMUSG00000031370
N
0.775
Zrsr1
Mus musculus
ENSMUSG00000044068
N
0.759
ENSOANG00000002571
Ornithorhynchus anatinus
ENSOANG00000002571
N
0.812
ENSOCUG00000004295
Oryctolagus cuniculus
ENSOCUG00000004295
N
0.777
ZRSR2
Oryzias latipes
ENSORLG00000003476
N
0.768
ENSPPYG00000020150
Pongo pygmaeus
ENSPPYG00000020150
N
0.777
ZRSR1
Pan troglodytes
ENSPTRG00000017138
N
0.777
ZRSR2
Pan troglodytes
ENSPTRG00000021693
N
0.777
ENSPVAG00000010216
Pteropus vampyrus
ENSPVAG00000010216
N
0.777
Zrsr1
Rattus norvegicus
ENSRNOG00000009639
N
0.759
Zrsr2
Rattus norvegicus
ENSRNOG00000033176
N
0.775
ENSTBEG00000008533
Tupaia belangeri
ENSTBEG00000008533
N
0.714
ZRSR2
Taeniopygia guttata
ENSTGUG00000007964
N
0.768
ZRSR2
Tetraodon nigroviridis
ENSTNIG00000009495
N
0.795
Q9W6Q9_FUGRU
Takifugu rubripes
ENSTRUG00000017089
N
0.821
ENSTSYG00000005278
Tarsius syrichta
ENSTSYG00000005278
N
0.777
ENSVPAG00000007641
Vicugna pacos
ENSVPAG00000007641
N
0.777
estExt_fgenesh2_pg.C_1250066
Branchiostoma floridae
estExt_fgenesh2_pg.C_1250066
N
0.730
estExt_fgenesh2_pg.C_300183
Branchiostoma floridae
estExt_fgenesh2_pg.C_300183
N
0.730